Strain Fitness in Pseudomonas simiae WCS417 around PS417_01085

Experiment: P. simiae OR Antrim MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_01080 and PS417_01085 are separated by 24 nucleotidesPS417_01085 and PS417_01090 are separated by 186 nucleotides PS417_01080: PS417_01080 - acyl-CoA dehydrogenase, at 236,527 to 237,720 _01080 PS417_01085: PS417_01085 - monooxygenase, at 237,745 to 238,986 _01085 PS417_01090: PS417_01090 - hypothetical protein, at 239,173 to 239,937 _01090 Position (kb) 237 238 239Strain fitness (log2 ratio) -2 -1 0 1 2 3at 237.031 kb on - strand, within PS417_01080at 237.031 kb on - strand, within PS417_01080at 237.236 kb on + strand, within PS417_01080at 237.236 kb on + strand, within PS417_01080at 237.236 kb on + strand, within PS417_01080at 237.254 kb on + strand, within PS417_01080at 237.438 kb on - strand, within PS417_01080at 237.838 kb on + strandat 238.103 kb on + strand, within PS417_01085at 238.103 kb on + strand, within PS417_01085at 238.103 kb on + strand, within PS417_01085at 238.104 kb on - strand, within PS417_01085at 238.104 kb on - strand, within PS417_01085at 238.104 kb on - strand, within PS417_01085at 238.104 kb on - strand, within PS417_01085at 238.163 kb on - strand, within PS417_01085at 238.429 kb on + strandat 238.475 kb on + strand, within PS417_01085at 238.475 kb on + strand, within PS417_01085at 238.499 kb on + strand, within PS417_01085at 238.499 kb on + strandat 238.499 kb on + strand, within PS417_01085at 238.500 kb on - strand, within PS417_01085at 238.500 kb on - strand, within PS417_01085at 238.758 kb on - strand, within PS417_01085at 238.981 kb on - strandat 238.981 kb on - strandat 239.011 kb on - strandat 239.011 kb on - strandat 239.072 kb on - strandat 239.213 kb on + strandat 239.213 kb on + strandat 239.318 kb on + strand, within PS417_01090at 239.318 kb on + strand, within PS417_01090at 239.318 kb on + strand, within PS417_01090at 239.377 kb on + strand, within PS417_01090at 239.378 kb on - strand, within PS417_01090at 239.591 kb on + strand, within PS417_01090at 239.592 kb on - strand, within PS417_01090at 239.635 kb on + strand, within PS417_01090at 239.636 kb on - strand, within PS417_01090at 239.636 kb on - strand, within PS417_01090at 239.636 kb on - strand, within PS417_01090at 239.636 kb on - strand, within PS417_01090at 239.687 kb on + strand, within PS417_01090at 239.838 kb on - strand, within PS417_01090at 239.938 kb on - strandat 239.941 kb on + strandat 239.941 kb on + strandat 239.942 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction P. simiae OR Antrim MOI 1
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237,031 - PS417_01080 0.42 -0.3
237,031 - PS417_01080 0.42 +0.5
237,236 + PS417_01080 0.59 +0.7
237,236 + PS417_01080 0.59 -0.8
237,236 + PS417_01080 0.59 -0.2
237,254 + PS417_01080 0.61 +0.6
237,438 - PS417_01080 0.76 +1.7
237,838 + +0.2
238,103 + PS417_01085 0.29 +0.0
238,103 + PS417_01085 0.29 +0.6
238,103 + PS417_01085 0.29 +2.7
238,104 - PS417_01085 0.29 +1.2
238,104 - PS417_01085 0.29 +0.1
238,104 - PS417_01085 0.29 +1.5
238,104 - PS417_01085 0.29 +0.7
238,163 - PS417_01085 0.34 -0.3
238,429 + +0.7
238,475 + PS417_01085 0.59 -0.3
238,475 + PS417_01085 0.59 -1.2
238,499 + PS417_01085 0.61 -0.4
238,499 + +1.0
238,499 + PS417_01085 0.61 -0.0
238,500 - PS417_01085 0.61 -0.9
238,500 - PS417_01085 0.61 +0.8
238,758 - PS417_01085 0.82 +0.8
238,981 - +0.9
238,981 - -0.3
239,011 - -0.1
239,011 - +0.1
239,072 - -0.3
239,213 + +0.4
239,213 + +0.8
239,318 + PS417_01090 0.19 -0.3
239,318 + PS417_01090 0.19 -0.3
239,318 + PS417_01090 0.19 +0.9
239,377 + PS417_01090 0.27 -0.8
239,378 - PS417_01090 0.27 -0.6
239,591 + PS417_01090 0.55 -0.9
239,592 - PS417_01090 0.55 +0.4
239,635 + PS417_01090 0.60 +0.1
239,636 - PS417_01090 0.61 -1.4
239,636 - PS417_01090 0.61 -0.3
239,636 - PS417_01090 0.61 -2.3
239,636 - PS417_01090 0.61 +0.3
239,687 + PS417_01090 0.67 +1.2
239,838 - PS417_01090 0.87 +0.7
239,938 - -1.3
239,941 + -0.0
239,941 + +0.8
239,942 - +3.0

Or see this region's nucleotide sequence