Strain Fitness in Pseudomonas simiae WCS417 around PS417_10730

Experiment: P. simiae OR Antrim MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. simiae OR Antrim MOI 1
2,292,223	-		PS417_10725	0.50	+0.3
2,292,226	-		PS417_10725	0.50	-1.5
2,292,226	-		PS417_10725	0.50	+1.5
2,292,835	-		PS417_10725	0.83	+1.0
2,292,835	-		PS417_10725	0.83	+0.2
2,293,119	+				-0.4
2,293,140	+				-0.5
2,293,141	-				+0.2
2,293,141	-				+1.5
2,293,153	+				-1.3
2,293,256	+				+0.2
2,293,262	+				-0.1
2,293,262	+				+0.7
2,293,264	+				+0.1
2,293,265	-				+1.0
2,293,450	-		PS417_10730	0.17	-0.0
2,293,450	-		PS417_10730	0.17	-1.4
2,293,450	-		PS417_10730	0.17	-0.5
2,293,517	+		PS417_10730	0.22	-1.7
2,293,517	+		PS417_10730	0.22	-0.6
2,293,518	-		PS417_10730	0.22	+0.5
2,293,518	-				+1.5
2,293,520	-		PS417_10730	0.22	+0.1
2,293,549	-		PS417_10730	0.24	+0.0
2,293,549	-				-0.1
2,293,555	+				-0.5
2,293,556	-		PS417_10730	0.24	+0.4
2,293,675	-		PS417_10730	0.33	+0.5
2,293,714	-		PS417_10730	0.35	+0.3
2,293,780	+		PS417_10730	0.40	+1.7
2,293,784	+		PS417_10730	0.40	-0.6
2,293,784	+		PS417_10730	0.40	-3.4
2,293,785	-		PS417_10730	0.40	+1.5
2,293,939	+		PS417_10730	0.51	+1.2
2,293,987	-		PS417_10730	0.54	+0.4
2,294,011	+		PS417_10730	0.56	+0.4
2,294,068	+		PS417_10730	0.59	+0.0
2,294,068	+		PS417_10730	0.59	+0.0
2,294,068	+		PS417_10730	0.59	-0.4
2,294,068	+		PS417_10730	0.59	+0.3
2,294,069	-		PS417_10730	0.60	+0.7
2,294,069	-		PS417_10730	0.60	-0.0
2,294,069	-		PS417_10730	0.60	-0.0
2,294,069	-		PS417_10730	0.60	+0.6
2,294,071	-		PS417_10730	0.60	+0.5
2,294,092	-		PS417_10730	0.61	+0.5
2,294,117	-		PS417_10730	0.63	-0.1
2,294,117	-		PS417_10730	0.63	+0.2
2,294,158	-		PS417_10730	0.66	+0.4
2,294,204	-		PS417_10730	0.69	-0.7
2,294,218	-				+2.5
2,294,227	+		PS417_10730	0.70	-1.7
2,294,269	+		PS417_10730	0.73	+0.2
2,294,270	-		PS417_10730	0.73	+1.3
2,294,293	+				+2.0
2,294,294	-		PS417_10730	0.75	-0.4
2,294,307	+		PS417_10730	0.76	-0.5
2,294,307	+		PS417_10730	0.76	+2.3
2,294,308	-		PS417_10730	0.76	+1.6
2,294,542	+				-0.3
2,294,542	+				-1.1
2,294,542	+				-0.1
2,294,542	+				+0.4
2,294,542	+				-0.9
2,294,571	-				-0.7
2,294,657	+				+2.4
2,294,658	-				+1.5
2,294,741	+				-0.4
2,294,742	-				+0.0
2,294,742	-				+0.0
2,294,757	-		PS417_10735	0.11	-0.5
2,294,874	+		PS417_10735	0.34	+0.2
2,294,874	+		PS417_10735	0.34	+0.6
2,294,898	-		PS417_10735	0.38	-0.7
2,294,901	+		PS417_10735	0.39	+0.6
2,294,902	-		PS417_10735	0.39	-0.3
2,295,081	-		PS417_10735	0.73	-0.1
2,295,085	-		PS417_10735	0.73	-0.6
2,295,096	-		PS417_10735	0.76	-0.1
2,295,223	-				-0.5
2,295,293	+				-0.2
2,295,294	-				+0.4
2,295,357	+		PS417_10740	0.27	-0.9
2,295,363	+		PS417_10740	0.30	-0.2
2,295,364	-				-2.0
2,295,364	-		PS417_10740	0.30	+0.4
2,295,364	-		PS417_10740	0.30	+0.7
2,295,364	-		PS417_10740	0.30	+1.3
2,295,364	-		PS417_10740	0.30	+0.4
2,295,364	-		PS417_10740	0.30	+0.7
2,295,387	-				+1.2
2,295,387	-		PS417_10740	0.41	+1.0
2,295,508	+				+0.8
2,295,508	+				+0.8
2,295,509	-				-0.1
2,295,509	-				-3.3
2,295,509	-				+1.2
2,295,593	+		PS417_10745	0.11	+0.6
2,295,593	+		PS417_10745	0.11	+0.4
2,295,593	+		PS417_10745	0.11	-0.4
2,295,594	-		PS417_10745	0.11	-0.6
2,295,642	+		PS417_10745	0.18	-0.4
2,295,642	+		PS417_10745	0.18	-0.3
2,295,642	+		PS417_10745	0.18	-0.8