Strain Fitness in Pseudomonas simiae WCS417 around PS417_09825

Experiment: P. simiae OR Antrim MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. simiae OR Antrim MOI 1
2,129,726	+		PS417_09815	0.25	+0.7
2,129,745	+		PS417_09815	0.29	+2.1
2,129,745	+		PS417_09815	0.29	+0.1
2,129,746	-		PS417_09815	0.29	-0.1
2,129,753	-		PS417_09815	0.30	+0.9
2,129,754	+		PS417_09815	0.30	-0.0
2,129,754	+		PS417_09815	0.30	+1.2
2,129,754	+		PS417_09815	0.30	+1.1
2,129,754	+		PS417_09815	0.30	+1.2
2,129,754	+		PS417_09815	0.30	-0.8
2,129,755	-		PS417_09815	0.30	-0.5
2,129,755	-		PS417_09815	0.30	-0.0
2,129,778	+		PS417_09815	0.34	+0.1
2,129,808	+		PS417_09815	0.39	-0.2
2,129,808	+		PS417_09815	0.39	-0.1
2,129,808	+				+0.9
2,129,809	-		PS417_09815	0.39	-0.2
2,129,809	-		PS417_09815	0.39	-0.2
2,129,811	-				-1.1
2,129,864	-		PS417_09815	0.48	+0.1
2,130,196	-				-1.3
2,130,219	+				+0.9
2,130,219	+				+2.2
2,130,220	-				+0.6
2,130,315	+				-3.0
2,130,315	+				-0.4
2,130,315	+				-0.6
2,130,315	+				-0.6
2,130,315	+				+0.0
2,130,315	+				-0.1
2,130,315	+				+1.8
2,130,315	+				+0.5
2,130,316	-				+0.8
2,130,700	-		PS417_09825	0.30	+0.2
2,130,882	+		PS417_09825	0.79	-0.5
2,130,882	+		PS417_09825	0.79	+0.9
2,130,883	-		PS417_09825	0.79	-3.2
2,130,910	+		PS417_09825	0.86	-0.5
2,130,910	+		PS417_09825	0.86	+0.5
2,130,911	-		PS417_09825	0.86	-0.0
2,130,911	-		PS417_09825	0.86	+0.6
2,130,912	+		PS417_09825	0.87	-0.1
2,130,912	+		PS417_09825	0.87	-2.9
2,130,912	+		PS417_09825	0.87	+1.9
2,130,913	-		PS417_09825	0.87	+1.3
2,130,913	-		PS417_09825	0.87	+0.8
2,130,913	-		PS417_09825	0.87	+0.7
2,130,913	-				-0.8
2,130,913	-		PS417_09825	0.87	-1.8
2,130,961	+				-0.8
2,130,961	+				+0.3
2,130,961	+				-1.5
2,130,961	+				+0.3
2,130,962	-				-0.0
2,130,962	-				+1.5
2,130,989	+				+0.3
2,131,035	+				-0.5
2,131,074	+				+0.3
2,131,075	-				-2.3
2,131,237	+		PS417_09830	0.41	-0.5
2,131,237	+		PS417_09830	0.41	-1.0
2,131,238	-		PS417_09830	0.42	+1.4
2,131,258	+		PS417_09830	0.47	+1.5
2,131,259	-		PS417_09830	0.48	-0.7
2,131,379	+		PS417_09830	0.81	+0.2
2,131,380	-		PS417_09830	0.82	-0.1
2,131,380	-		PS417_09830	0.82	+0.0
2,131,424	+				-2.2
2,131,503	+				-0.1
2,131,602	-				-0.5
2,131,647	-				-0.9
2,131,667	+				+0.3
2,131,667	+				+0.2
2,131,668	-				-0.1
2,131,668	-				-0.1
2,131,715	+				-2.0
2,131,716	-				-1.4
2,131,716	-				-0.9
2,131,716	-				+0.0
2,131,716	-				+0.9
2,131,721	+				+0.0
2,131,727	+				-0.4
2,131,727	+				+1.0
2,131,728	-				+0.3
2,131,728	-				+0.4
2,131,803	-				+0.9
2,131,808	+				+0.3
2,131,854	+		PS417_09835	0.13	-2.1
2,131,949	+		PS417_09835	0.39	+0.6
2,131,949	+		PS417_09835	0.39	+0.0
2,131,949	+		PS417_09835	0.39	+1.0
2,131,953	-		PS417_09835	0.41	+0.9