Experiment: P. simiae OR Antrim MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_00945 and PS417_00950 are separated by 70 nucleotides PS417_00950 and PS417_00955 are separated by 83 nucleotides PS417_00955 and PS417_00960 are separated by 37 nucleotides PS417_00960 and PS417_00965 are separated by 127 nucleotides
PS417_00945: PS417_00945 - sulfate ABC transporter ATP-binding protein, at 211,281 to 212,261
_00945
PS417_00950: PS417_00950 - membrane protein, at 212,332 to 212,856
_00950
PS417_00955: PS417_00955 - Crp/Fnr family transcriptional regulator, at 212,940 to 213,626
_00955
PS417_00960: PS417_00960 - transcriptional regulator, at 213,664 to 214,029
_00960
PS417_00965: PS417_00965 - AraC family transcriptional regulator, at 214,157 to 215,161
_00965
Position (kb) 212
213
214 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 211.980 kb on + strand, within PS417_00945 at 212.452 kb on + strand, within PS417_00950 at 212.502 kb on - strand, within PS417_00950 at 212.505 kb on - strand, within PS417_00950 at 212.860 kb on + strand at 212.871 kb on + strand at 212.871 kb on + strand at 212.872 kb on - strand at 212.872 kb on - strand at 213.014 kb on + strand, within PS417_00955 at 213.015 kb on - strand, within PS417_00955 at 213.015 kb on - strand, within PS417_00955 at 213.015 kb on - strand, within PS417_00955 at 213.015 kb on - strand, within PS417_00955 at 213.060 kb on + strand, within PS417_00955 at 213.061 kb on - strand, within PS417_00955 at 213.061 kb on - strand, within PS417_00955 at 213.061 kb on - strand, within PS417_00955 at 213.096 kb on + strand, within PS417_00955 at 213.289 kb on + strand, within PS417_00955 at 213.289 kb on + strand, within PS417_00955 at 213.290 kb on - strand, within PS417_00955 at 213.290 kb on - strand, within PS417_00955 at 213.464 kb on - strand, within PS417_00955 at 213.464 kb on - strand, within PS417_00955 at 213.664 kb on - strand at 213.952 kb on + strand, within PS417_00960 at 213.953 kb on - strand, within PS417_00960 at 213.953 kb on - strand, within PS417_00960
Per-strain Table
Position Strand Gene LocusTag Fraction P. simiae OR Antrim MOI 1 remove 211,980 + PS417_00945 0.71 -0.1 212,452 + PS417_00950 0.23 -0.0 212,502 - PS417_00950 0.32 -0.4 212,505 - PS417_00950 0.33 -0.1 212,860 + -0.7 212,871 + +0.1 212,871 + -0.6 212,872 - +0.6 212,872 - +1.2 213,014 + PS417_00955 0.11 +0.5 213,015 - PS417_00955 0.11 -2.3 213,015 - PS417_00955 0.11 -0.2 213,015 - PS417_00955 0.11 -2.5 213,015 - PS417_00955 0.11 +0.4 213,060 + PS417_00955 0.17 -0.6 213,061 - PS417_00955 0.18 +1.2 213,061 - PS417_00955 0.18 +0.4 213,061 - PS417_00955 0.18 +0.5 213,096 + PS417_00955 0.23 +0.0 213,289 + PS417_00955 0.51 +0.1 213,289 + PS417_00955 0.51 -2.9 213,290 - PS417_00955 0.51 -1.6 213,290 - PS417_00955 0.51 +0.3 213,464 - PS417_00955 0.76 -1.7 213,464 - PS417_00955 0.76 +1.7 213,664 - -2.4 213,952 + PS417_00960 0.79 -0.5 213,953 - PS417_00960 0.79 -0.2 213,953 - PS417_00960 0.79 +0.2
Or see this region's nucleotide sequence