Strain Fitness in Pseudomonas simiae WCS417 around PS417_09230

Experiment: P. simiae OR Antrim MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. simiae OR Antrim MOI 1
2,003,808	+		PS417_09225	0.19	+1.3
2,004,187	-		PS417_09225	0.52	+0.4
2,004,234	-		PS417_09225	0.56	-0.1
2,004,260	+		PS417_09225	0.59	+0.8
2,004,333	-		PS417_09225	0.65	+0.5
2,004,333	-		PS417_09225	0.65	-0.5
2,004,333	-		PS417_09225	0.65	-1.3
2,004,553	-		PS417_09225	0.84	-0.4
2,004,681	+				-1.2
2,004,682	-				+0.4
2,004,684	-				-0.6
2,004,732	+				-1.8
2,004,733	-				-1.5
2,004,742	+				+0.3
2,004,742	+				+0.6
2,004,743	-				+0.5
2,004,925	+				+1.3
2,004,925	+				-1.0
2,004,926	-				+1.4
2,004,955	-				-1.3
2,005,189	+		PS417_09230	0.21	+0.4
2,005,189	+				+1.1
2,005,576	+				+1.5
2,005,576	+		PS417_09230	0.41	+0.4
2,005,673	+		PS417_09230	0.46	+0.9
2,005,673	+		PS417_09230	0.46	+1.0
2,005,796	-		PS417_09230	0.53	-0.6
2,005,796	-		PS417_09230	0.53	-0.1
2,005,855	+		PS417_09230	0.56	+0.0
2,005,855	+		PS417_09230	0.56	+1.1
2,005,855	+		PS417_09230	0.56	+0.0
2,005,856	-		PS417_09230	0.56	-1.1
2,005,856	-		PS417_09230	0.56	-0.1
2,005,856	-		PS417_09230	0.56	+0.6
2,006,123	-		PS417_09230	0.70	-0.3
2,006,254	+		PS417_09230	0.77	-1.3
2,006,255	-		PS417_09230	0.77	+3.3
2,006,255	-		PS417_09230	0.77	+1.0
2,006,255	-		PS417_09230	0.77	+0.1
2,006,257	+		PS417_09230	0.78	-0.4
2,006,257	+		PS417_09230	0.78	+0.4
2,006,258	-		PS417_09230	0.78	-1.4
2,006,258	-		PS417_09230	0.78	+1.2
2,006,347	+		PS417_09230	0.82	+0.1
2,006,347	+		PS417_09230	0.82	-0.1
2,006,674	+				+0.4
2,006,675	-				-0.4
2,006,740	+				-0.4
2,007,039	+		PS417_09235	0.79	+0.7
2,007,114	+				+0.9
2,007,141	+				-0.6
2,007,270	+				-0.6
2,007,271	-				+0.0