Experiment: P. simiae OR Antrim MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_00905 and PS417_00910 are separated by 2 nucleotides PS417_00910 and PS417_00915 are separated by 188 nucleotides
PS417_00905: PS417_00905 - histidine kinase, at 202,271 to 203,479
_00905
PS417_00910: PS417_00910 - diguanylate cyclase, at 203,482 to 204,483
_00910
PS417_00915: PS417_00915 - aminotransferase, at 204,672 to 205,856
_00915
Position (kb) 203
204
205 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5 at 202.679 kb on + strand, within PS417_00905 at 202.679 kb on + strand, within PS417_00905 at 202.940 kb on - strand, within PS417_00905 at 203.117 kb on + strand, within PS417_00905 at 203.228 kb on + strand, within PS417_00905 at 203.229 kb on - strand, within PS417_00905 at 203.246 kb on + strand, within PS417_00905 at 203.246 kb on + strand, within PS417_00905 at 203.247 kb on - strand, within PS417_00905 at 203.352 kb on + strand, within PS417_00905 at 203.525 kb on + strand at 203.526 kb on - strand at 203.526 kb on - strand at 203.630 kb on + strand, within PS417_00910 at 203.631 kb on - strand, within PS417_00910 at 203.787 kb on + strand, within PS417_00910 at 204.071 kb on + strand, within PS417_00910 at 204.071 kb on + strand, within PS417_00910 at 204.072 kb on - strand, within PS417_00910 at 204.072 kb on - strand, within PS417_00910 at 204.072 kb on - strand, within PS417_00910 at 204.179 kb on + strand, within PS417_00910 at 204.180 kb on - strand, within PS417_00910 at 204.266 kb on + strand, within PS417_00910 at 204.281 kb on + strand, within PS417_00910 at 204.281 kb on + strand, within PS417_00910 at 204.282 kb on - strand, within PS417_00910 at 204.282 kb on - strand, within PS417_00910 at 204.282 kb on - strand, within PS417_00910 at 204.531 kb on - strand at 204.573 kb on + strand at 204.597 kb on - strand at 204.640 kb on + strand at 204.697 kb on + strand at 204.786 kb on - strand at 205.395 kb on - strand, within PS417_00915 at 205.468 kb on + strand, within PS417_00915
Per-strain Table
Position Strand Gene LocusTag Fraction P. simiae OR Antrim MOI 1 remove 202,679 + PS417_00905 0.34 -0.3 202,679 + PS417_00905 0.34 -0.7 202,940 - PS417_00905 0.55 -0.6 203,117 + PS417_00905 0.70 +0.0 203,228 + PS417_00905 0.79 +0.7 203,229 - PS417_00905 0.79 +0.6 203,246 + PS417_00905 0.81 +0.3 203,246 + PS417_00905 0.81 +0.7 203,247 - PS417_00905 0.81 -1.0 203,352 + PS417_00905 0.89 -2.2 203,525 + +0.2 203,526 - +0.3 203,526 - -0.2 203,630 + PS417_00910 0.15 +0.8 203,631 - PS417_00910 0.15 +0.6 203,787 + PS417_00910 0.30 +5.0 204,071 + PS417_00910 0.59 +0.3 204,071 + PS417_00910 0.59 +0.2 204,072 - PS417_00910 0.59 -0.7 204,072 - PS417_00910 0.59 -0.1 204,072 - PS417_00910 0.59 +0.2 204,179 + PS417_00910 0.70 +1.3 204,180 - PS417_00910 0.70 +0.0 204,266 + PS417_00910 0.78 +0.6 204,281 + PS417_00910 0.80 +1.1 204,281 + PS417_00910 0.80 +1.3 204,282 - PS417_00910 0.80 -0.6 204,282 - PS417_00910 0.80 +0.9 204,282 - PS417_00910 0.80 -0.4 204,531 - -2.7 204,573 + +1.3 204,597 - +0.5 204,640 + +0.4 204,697 + +1.3 204,786 - +0.7 205,395 - PS417_00915 0.61 -0.8 205,468 + PS417_00915 0.67 +1.4
Or see this region's nucleotide sequence