Experiment: P. simiae OR Antrim MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_08615 and PS417_08620 are separated by 91 nucleotides PS417_08620 and PS417_08625 overlap by 4 nucleotides PS417_08625 and PS417_08630 are separated by 2 nucleotides
PS417_08615: PS417_08615 - diguanylate phosphodiesterase, at 1,882,975 to 1,884,138
_08615
PS417_08620: PS417_08620 - hypothetical protein, at 1,884,230 to 1,884,571
_08620
PS417_08625: PS417_08625 - membrane protein, at 1,884,568 to 1,884,951
_08625
PS417_08630: PS417_08630 - membrane protein, at 1,884,954 to 1,885,268
_08630
Position (kb) 1884
1885 Strain fitness (log2 ratio) -1
0
1 at 1883.244 kb on - strand, within PS417_08615 at 1883.475 kb on - strand, within PS417_08615 at 1883.482 kb on + strand, within PS417_08615 at 1883.483 kb on - strand, within PS417_08615 at 1883.483 kb on - strand, within PS417_08615 at 1883.483 kb on - strand, within PS417_08615 at 1884.149 kb on + strand at 1884.149 kb on + strand at 1884.150 kb on - strand at 1884.421 kb on + strand, within PS417_08620 at 1884.686 kb on + strand, within PS417_08625 at 1884.687 kb on - strand, within PS417_08625 at 1885.272 kb on + strand at 1885.273 kb on - strand at 1885.432 kb on + strand at 1885.436 kb on + strand at 1885.514 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction P. simiae OR Antrim MOI 1 remove 1,883,244 - PS417_08615 0.23 +0.1 1,883,475 - PS417_08615 0.43 -1.3 1,883,482 + PS417_08615 0.44 +0.5 1,883,483 - PS417_08615 0.44 +0.7 1,883,483 - PS417_08615 0.44 -0.3 1,883,483 - PS417_08615 0.44 +0.1 1,884,149 + +0.4 1,884,149 + -0.1 1,884,150 - +0.6 1,884,421 + PS417_08620 0.56 -1.4 1,884,686 + PS417_08625 0.31 -0.1 1,884,687 - PS417_08625 0.31 -0.2 1,885,272 + +0.0 1,885,273 - -0.5 1,885,432 + -0.1 1,885,436 + +0.3 1,885,514 + -0.3
Or see this region's nucleotide sequence