Experiment: P. simiae OR Antrim MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_00760 and PS417_00765 are separated by 31 nucleotides PS417_00765 and PS417_00770 are separated by 904 nucleotides
PS417_00760: PS417_00760 - ShlB family hemolysin secretion/activation protein, at 161,475 to 163,196
_00760
PS417_00765: PS417_00765 - filamentous hemagglutinin, at 163,228 to 170,496
_00765
PS417_00770: PS417_00770 - autotransporter, at 171,401 to 173,989
_00770
Position (kb) 163
164
165
166
167
168
169
170
171 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 162.262 kb on + strand, within PS417_00760 at 162.324 kb on + strand, within PS417_00760 at 162.325 kb on - strand, within PS417_00760 at 162.327 kb on + strand, within PS417_00760 at 162.327 kb on + strand, within PS417_00760 at 162.360 kb on + strand, within PS417_00760 at 162.366 kb on + strand, within PS417_00760 at 162.366 kb on + strand at 162.367 kb on - strand, within PS417_00760 at 162.390 kb on + strand, within PS417_00760 at 162.390 kb on + strand, within PS417_00760 at 162.390 kb on + strand, within PS417_00760 at 162.390 kb on + strand, within PS417_00760 at 162.390 kb on + strand, within PS417_00760 at 162.391 kb on - strand, within PS417_00760 at 162.391 kb on - strand, within PS417_00760 at 162.391 kb on - strand, within PS417_00760 at 162.524 kb on + strand, within PS417_00760 at 162.524 kb on + strand, within PS417_00760 at 162.525 kb on - strand, within PS417_00760 at 162.525 kb on - strand, within PS417_00760 at 162.525 kb on - strand, within PS417_00760 at 162.527 kb on + strand, within PS417_00760 at 162.527 kb on + strand, within PS417_00760 at 162.527 kb on + strand, within PS417_00760 at 162.528 kb on - strand, within PS417_00760 at 162.528 kb on - strand, within PS417_00760 at 162.528 kb on - strand, within PS417_00760 at 162.528 kb on - strand, within PS417_00760 at 162.528 kb on - strand, within PS417_00760 at 162.531 kb on + strand, within PS417_00760 at 162.531 kb on + strand, within PS417_00760 at 162.531 kb on + strand, within PS417_00760 at 162.532 kb on - strand, within PS417_00760 at 162.532 kb on - strand, within PS417_00760 at 162.532 kb on - strand, within PS417_00760 at 162.532 kb on - strand, within PS417_00760 at 162.532 kb on - strand, within PS417_00760 at 162.532 kb on - strand, within PS417_00760 at 162.548 kb on + strand, within PS417_00760 at 162.732 kb on + strand, within PS417_00760 at 162.733 kb on - strand, within PS417_00760 at 162.750 kb on + strand, within PS417_00760 at 162.751 kb on - strand, within PS417_00760 at 163.033 kb on - strand at 163.034 kb on + strand at 163.170 kb on + strand at 163.171 kb on - strand at 163.194 kb on + strand at 163.328 kb on + strand at 163.329 kb on - strand at 163.489 kb on + strand at 163.561 kb on + strand at 163.561 kb on + strand at 163.562 kb on - strand at 163.564 kb on - strand at 163.799 kb on - strand at 164.034 kb on + strand, within PS417_00765 at 164.034 kb on + strand, within PS417_00765 at 164.038 kb on + strand, within PS417_00765 at 164.038 kb on + strand, within PS417_00765 at 164.038 kb on + strand, within PS417_00765 at 164.039 kb on - strand, within PS417_00765 at 164.039 kb on - strand, within PS417_00765 at 164.237 kb on + strand, within PS417_00765 at 164.238 kb on - strand, within PS417_00765 at 164.238 kb on - strand, within PS417_00765 at 164.845 kb on - strand, within PS417_00765 at 164.845 kb on - strand, within PS417_00765 at 165.197 kb on + strand, within PS417_00765 at 165.198 kb on - strand, within PS417_00765 at 165.198 kb on - strand, within PS417_00765 at 165.198 kb on - strand, within PS417_00765 at 166.100 kb on + strand, within PS417_00765 at 166.100 kb on + strand, within PS417_00765 at 166.179 kb on + strand, within PS417_00765 at 166.180 kb on - strand, within PS417_00765 at 166.308 kb on - strand, within PS417_00765 at 166.326 kb on + strand, within PS417_00765 at 166.776 kb on + strand, within PS417_00765 at 166.780 kb on + strand at 166.780 kb on + strand, within PS417_00765 at 166.781 kb on - strand, within PS417_00765 at 166.793 kb on - strand, within PS417_00765 at 166.971 kb on - strand, within PS417_00765 at 166.971 kb on - strand, within PS417_00765 at 167.026 kb on + strand, within PS417_00765 at 167.027 kb on - strand, within PS417_00765 at 167.035 kb on + strand, within PS417_00765 at 167.035 kb on + strand, within PS417_00765 at 167.036 kb on - strand, within PS417_00765 at 167.079 kb on - strand, within PS417_00765 at 167.079 kb on - strand, within PS417_00765 at 167.079 kb on - strand, within PS417_00765 at 167.109 kb on + strand, within PS417_00765 at 167.110 kb on - strand, within PS417_00765 at 167.269 kb on + strand, within PS417_00765 at 167.379 kb on + strand, within PS417_00765 at 167.417 kb on - strand, within PS417_00765 at 167.763 kb on + strand, within PS417_00765 at 167.763 kb on + strand, within PS417_00765 at 167.764 kb on - strand, within PS417_00765 at 167.764 kb on - strand, within PS417_00765 at 167.773 kb on + strand, within PS417_00765 at 167.773 kb on + strand, within PS417_00765 at 167.774 kb on - strand, within PS417_00765 at 167.774 kb on - strand, within PS417_00765 at 167.774 kb on - strand, within PS417_00765 at 167.774 kb on - strand, within PS417_00765 at 167.831 kb on - strand, within PS417_00765 at 168.139 kb on + strand, within PS417_00765 at 168.139 kb on + strand, within PS417_00765 at 168.139 kb on + strand, within PS417_00765 at 168.139 kb on + strand, within PS417_00765 at 168.168 kb on - strand, within PS417_00765 at 168.168 kb on - strand, within PS417_00765 at 168.289 kb on + strand, within PS417_00765 at 168.290 kb on - strand, within PS417_00765 at 168.290 kb on - strand, within PS417_00765 at 168.615 kb on + strand, within PS417_00765 at 168.616 kb on - strand, within PS417_00765 at 168.927 kb on + strand, within PS417_00765 at 168.928 kb on - strand, within PS417_00765 at 168.991 kb on + strand, within PS417_00765 at 168.997 kb on + strand, within PS417_00765 at 168.997 kb on + strand, within PS417_00765 at 169.042 kb on + strand, within PS417_00765 at 169.051 kb on + strand, within PS417_00765 at 169.052 kb on - strand, within PS417_00765 at 169.052 kb on - strand, within PS417_00765 at 169.068 kb on + strand, within PS417_00765 at 169.083 kb on + strand, within PS417_00765 at 169.084 kb on - strand, within PS417_00765 at 169.184 kb on - strand, within PS417_00765 at 169.184 kb on - strand, within PS417_00765 at 169.414 kb on - strand, within PS417_00765 at 169.558 kb on + strand, within PS417_00765 at 169.558 kb on + strand, within PS417_00765 at 169.602 kb on + strand at 169.602 kb on + strand, within PS417_00765 at 169.603 kb on - strand, within PS417_00765 at 169.770 kb on + strand at 169.771 kb on - strand at 169.771 kb on - strand at 169.821 kb on + strand at 169.946 kb on + strand at 169.946 kb on + strand at 169.946 kb on + strand at 169.963 kb on + strand at 169.963 kb on + strand at 169.963 kb on + strand at 169.964 kb on - strand at 170.001 kb on + strand at 170.092 kb on + strand at 170.092 kb on + strand at 170.092 kb on + strand at 170.093 kb on - strand at 170.093 kb on - strand at 170.098 kb on + strand at 170.098 kb on + strand at 170.099 kb on - strand at 170.099 kb on - strand at 170.211 kb on - strand at 170.257 kb on - strand at 170.456 kb on - strand at 170.508 kb on + strand at 170.514 kb on + strand at 170.517 kb on + strand at 170.587 kb on + strand at 170.588 kb on - strand at 170.642 kb on + strand at 170.642 kb on + strand at 170.678 kb on - strand at 170.715 kb on + strand at 170.784 kb on - strand at 170.917 kb on + strand at 170.917 kb on + strand at 171.080 kb on + strand at 171.080 kb on + strand at 171.081 kb on - strand at 171.119 kb on + strand at 171.212 kb on + strand at 171.311 kb on + strand at 171.311 kb on + strand at 171.312 kb on - strand at 171.344 kb on - strand at 171.365 kb on - strand at 171.384 kb on - strand at 171.396 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction P. simiae OR Antrim MOI 1 remove 162,262 + PS417_00760 0.46 +0.3 162,324 + PS417_00760 0.49 +0.1 162,325 - PS417_00760 0.49 -0.1 162,327 + PS417_00760 0.49 +0.4 162,327 + PS417_00760 0.49 -0.0 162,360 + PS417_00760 0.51 +0.1 162,366 + PS417_00760 0.52 -1.4 162,366 + +1.3 162,367 - PS417_00760 0.52 -0.1 162,390 + PS417_00760 0.53 +0.6 162,390 + PS417_00760 0.53 +1.7 162,390 + PS417_00760 0.53 -0.5 162,390 + PS417_00760 0.53 +0.5 162,390 + PS417_00760 0.53 -1.3 162,391 - PS417_00760 0.53 -1.0 162,391 - PS417_00760 0.53 -0.3 162,391 - PS417_00760 0.53 -0.3 162,524 + PS417_00760 0.61 -0.3 162,524 + PS417_00760 0.61 +1.1 162,525 - PS417_00760 0.61 +2.7 162,525 - PS417_00760 0.61 +0.7 162,525 - PS417_00760 0.61 -1.4 162,527 + PS417_00760 0.61 +1.7 162,527 + PS417_00760 0.61 -0.3 162,527 + PS417_00760 0.61 +0.2 162,528 - PS417_00760 0.61 -0.1 162,528 - PS417_00760 0.61 +1.7 162,528 - PS417_00760 0.61 +1.3 162,528 - PS417_00760 0.61 +1.3 162,528 - PS417_00760 0.61 +0.4 162,531 + PS417_00760 0.61 -2.8 162,531 + PS417_00760 0.61 +0.8 162,531 + PS417_00760 0.61 -0.1 162,532 - PS417_00760 0.61 -1.1 162,532 - PS417_00760 0.61 +0.1 162,532 - PS417_00760 0.61 +0.4 162,532 - PS417_00760 0.61 -0.8 162,532 - PS417_00760 0.61 -1.8 162,532 - PS417_00760 0.61 +0.2 162,548 + PS417_00760 0.62 -1.0 162,732 + PS417_00760 0.73 -0.3 162,733 - PS417_00760 0.73 +0.3 162,750 + PS417_00760 0.74 +1.9 162,751 - PS417_00760 0.74 +0.6 163,033 - +1.1 163,034 + -0.5 163,170 + -0.3 163,171 - -0.3 163,194 + -0.3 163,328 + -0.2 163,329 - +0.7 163,489 + -1.5 163,561 + -0.2 163,561 + -0.7 163,562 - -0.6 163,564 - -0.1 163,799 - +2.1 164,034 + PS417_00765 0.11 -1.7 164,034 + PS417_00765 0.11 +0.8 164,038 + PS417_00765 0.11 -0.5 164,038 + PS417_00765 0.11 -0.8 164,038 + PS417_00765 0.11 -1.0 164,039 - PS417_00765 0.11 -0.8 164,039 - PS417_00765 0.11 -1.1 164,237 + PS417_00765 0.14 +0.6 164,238 - PS417_00765 0.14 +0.2 164,238 - PS417_00765 0.14 +0.4 164,845 - PS417_00765 0.22 -1.8 164,845 - PS417_00765 0.22 +0.6 165,197 + PS417_00765 0.27 -0.6 165,198 - PS417_00765 0.27 -0.5 165,198 - PS417_00765 0.27 +0.7 165,198 - PS417_00765 0.27 -0.8 166,100 + PS417_00765 0.40 -3.3 166,100 + PS417_00765 0.40 +0.5 166,179 + PS417_00765 0.41 -0.1 166,180 - PS417_00765 0.41 +0.2 166,308 - PS417_00765 0.42 -1.2 166,326 + PS417_00765 0.43 -0.8 166,776 + PS417_00765 0.49 -1.1 166,780 + +0.2 166,780 + PS417_00765 0.49 -2.5 166,781 - PS417_00765 0.49 -0.5 166,793 - PS417_00765 0.49 -0.6 166,971 - PS417_00765 0.51 +0.8 166,971 - PS417_00765 0.51 -0.5 167,026 + PS417_00765 0.52 +1.1 167,027 - PS417_00765 0.52 -0.2 167,035 + PS417_00765 0.52 +0.1 167,035 + PS417_00765 0.52 -1.5 167,036 - PS417_00765 0.52 +0.5 167,079 - PS417_00765 0.53 +0.6 167,079 - PS417_00765 0.53 +0.8 167,079 - PS417_00765 0.53 -0.2 167,109 + PS417_00765 0.53 +0.6 167,110 - PS417_00765 0.53 -0.3 167,269 + PS417_00765 0.56 -1.3 167,379 + PS417_00765 0.57 +0.0 167,417 - PS417_00765 0.58 -0.4 167,763 + PS417_00765 0.62 -0.3 167,763 + PS417_00765 0.62 -0.2 167,764 - PS417_00765 0.62 +0.7 167,764 - PS417_00765 0.62 +0.9 167,773 + PS417_00765 0.63 -0.6 167,773 + PS417_00765 0.63 +0.5 167,774 - PS417_00765 0.63 -0.8 167,774 - PS417_00765 0.63 -0.2 167,774 - PS417_00765 0.63 +0.7 167,774 - PS417_00765 0.63 +0.2 167,831 - PS417_00765 0.63 -1.5 168,139 + PS417_00765 0.68 -1.1 168,139 + PS417_00765 0.68 -1.3 168,139 + PS417_00765 0.68 -1.9 168,139 + PS417_00765 0.68 +0.3 168,168 - PS417_00765 0.68 +0.0 168,168 - PS417_00765 0.68 -2.1 168,289 + PS417_00765 0.70 -1.1 168,290 - PS417_00765 0.70 +0.4 168,290 - PS417_00765 0.70 -0.1 168,615 + PS417_00765 0.74 +0.1 168,616 - PS417_00765 0.74 +0.3 168,927 + PS417_00765 0.78 -0.5 168,928 - PS417_00765 0.78 -0.6 168,991 + PS417_00765 0.79 +0.8 168,997 + PS417_00765 0.79 +0.7 168,997 + PS417_00765 0.79 -0.7 169,042 + PS417_00765 0.80 -1.8 169,051 + PS417_00765 0.80 +0.4 169,052 - PS417_00765 0.80 +0.2 169,052 - PS417_00765 0.80 -1.0 169,068 + PS417_00765 0.80 +0.2 169,083 + PS417_00765 0.81 +0.2 169,084 - PS417_00765 0.81 -0.6 169,184 - PS417_00765 0.82 +0.7 169,184 - PS417_00765 0.82 -0.2 169,414 - PS417_00765 0.85 -1.0 169,558 + PS417_00765 0.87 -0.2 169,558 + PS417_00765 0.87 -0.1 169,602 + +2.7 169,602 + PS417_00765 0.88 +0.9 169,603 - PS417_00765 0.88 -0.6 169,770 + +0.3 169,771 - -0.8 169,771 - +1.4 169,821 + -0.4 169,946 + +0.9 169,946 + +1.1 169,946 + -0.2 169,963 + +2.1 169,963 + +1.3 169,963 + +1.7 169,964 - -0.5 170,001 + +0.4 170,092 + +0.1 170,092 + +1.2 170,092 + +0.3 170,093 - -0.2 170,093 - -0.8 170,098 + -0.1 170,098 + -1.0 170,099 - +0.3 170,099 - +0.3 170,211 - -0.1 170,257 - -0.3 170,456 - +3.2 170,508 + +0.0 170,514 + -1.0 170,517 + -0.9 170,587 + -1.0 170,588 - +0.7 170,642 + +0.6 170,642 + -0.7 170,678 - +0.2 170,715 + -0.3 170,784 - -0.5 170,917 + -0.4 170,917 + -0.4 171,080 + -0.5 171,080 + +1.2 171,081 - -0.6 171,119 + -0.8 171,212 + -0.8 171,311 + +0.4 171,311 + -0.7 171,312 - +0.7 171,344 - +0.1 171,365 - -0.3 171,384 - +2.7 171,396 + +0.7
Or see this region's nucleotide sequence