Experiment: P. simiae OR Antrim MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_00750 and PS417_00755 are separated by 2 nucleotides PS417_00755 and PS417_00760 are separated by 367 nucleotides
PS417_00750: PS417_00750 - N-glycosyltransferase, at 159,282 to 160,622
_00750
PS417_00755: PS417_00755 - biofilm PGA synthesis protein PgaD, at 160,625 to 161,107
_00755
PS417_00760: PS417_00760 - ShlB family hemolysin secretion/activation protein, at 161,475 to 163,196
_00760
Position (kb) 160
161
162 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 159.753 kb on + strand, within PS417_00750 at 159.754 kb on - strand, within PS417_00750 at 159.805 kb on - strand, within PS417_00750 at 159.805 kb on - strand, within PS417_00750 at 159.805 kb on - strand, within PS417_00750 at 159.805 kb on - strand, within PS417_00750 at 159.996 kb on - strand, within PS417_00750 at 160.095 kb on + strand, within PS417_00750 at 160.096 kb on - strand, within PS417_00750 at 160.284 kb on - strand, within PS417_00750 at 160.284 kb on - strand, within PS417_00750 at 160.284 kb on - strand, within PS417_00750 at 160.309 kb on - strand, within PS417_00750 at 160.651 kb on + strand at 160.651 kb on + strand at 160.651 kb on + strand at 160.652 kb on - strand at 160.652 kb on - strand at 160.652 kb on - strand at 160.805 kb on + strand, within PS417_00755 at 161.106 kb on - strand at 161.157 kb on + strand at 161.221 kb on + strand at 161.222 kb on - strand at 161.261 kb on - strand at 161.344 kb on - strand at 161.344 kb on - strand at 161.434 kb on + strand at 161.779 kb on - strand, within PS417_00760 at 161.779 kb on - strand, within PS417_00760 at 161.874 kb on + strand, within PS417_00760 at 161.874 kb on + strand, within PS417_00760
Per-strain Table
Position Strand Gene LocusTag Fraction P. simiae OR Antrim MOI 1 remove 159,753 + PS417_00750 0.35 -0.1 159,754 - PS417_00750 0.35 +1.9 159,805 - PS417_00750 0.39 +2.7 159,805 - PS417_00750 0.39 -2.2 159,805 - PS417_00750 0.39 -2.1 159,805 - PS417_00750 0.39 +0.1 159,996 - PS417_00750 0.53 -3.0 160,095 + PS417_00750 0.61 -1.4 160,096 - PS417_00750 0.61 -0.5 160,284 - PS417_00750 0.75 -1.1 160,284 - PS417_00750 0.75 +1.3 160,284 - PS417_00750 0.75 +1.7 160,309 - PS417_00750 0.77 -0.9 160,651 + +1.2 160,651 + -1.6 160,651 + +0.7 160,652 - +0.5 160,652 - -0.8 160,652 - -1.5 160,805 + PS417_00755 0.37 -1.9 161,106 - -0.5 161,157 + +0.1 161,221 + +0.7 161,222 - +0.3 161,261 - +0.7 161,344 - -0.7 161,344 - +0.2 161,434 + +0.6 161,779 - PS417_00760 0.18 -0.3 161,779 - PS417_00760 0.18 -0.1 161,874 + PS417_00760 0.23 +2.2 161,874 + PS417_00760 0.23 -0.3
Or see this region's nucleotide sequence