Experiment: P. simiae OR Antrim MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_00630 and PS417_00635 are separated by 1 nucleotides PS417_00635 and PS417_00640 are separated by 11 nucleotides PS417_00640 and PS417_00645 are separated by 99 nucleotides
PS417_00630: PS417_00630 - nitrate ABC transporter substrate-binding protein, at 129,155 to 130,180
_00630
PS417_00635: PS417_00635 - sulfonate ABC transporter ATP-binding protein, at 130,182 to 131,033
_00635
PS417_00640: PS417_00640 - ABC transporter permease, at 131,045 to 131,893
_00640
PS417_00645: PS417_00645 - hypothetical protein, at 131,993 to 132,619
_00645
Position (kb) 130
131
132 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 129.293 kb on + strand, within PS417_00630 at 129.294 kb on - strand, within PS417_00630 at 129.642 kb on - strand, within PS417_00630 at 129.693 kb on - strand, within PS417_00630 at 129.693 kb on - strand, within PS417_00630 at 129.693 kb on - strand, within PS417_00630 at 129.831 kb on - strand, within PS417_00630 at 129.831 kb on - strand, within PS417_00630 at 129.906 kb on - strand, within PS417_00630 at 129.980 kb on + strand, within PS417_00630 at 129.980 kb on + strand, within PS417_00630 at 129.980 kb on + strand, within PS417_00630 at 129.980 kb on + strand, within PS417_00630 at 129.981 kb on - strand, within PS417_00630 at 129.981 kb on - strand, within PS417_00630 at 129.981 kb on - strand, within PS417_00630 at 130.142 kb on + strand at 130.143 kb on - strand at 130.143 kb on - strand at 130.143 kb on - strand at 130.143 kb on - strand at 130.143 kb on - strand at 130.398 kb on - strand, within PS417_00635 at 130.545 kb on - strand, within PS417_00635 at 130.587 kb on + strand, within PS417_00635 at 130.905 kb on + strand, within PS417_00635 at 130.905 kb on + strand, within PS417_00635 at 131.028 kb on + strand at 131.029 kb on - strand at 131.058 kb on - strand at 131.058 kb on - strand at 131.070 kb on + strand at 131.071 kb on - strand at 131.071 kb on - strand at 131.206 kb on + strand, within PS417_00640 at 131.321 kb on + strand, within PS417_00640 at 131.321 kb on + strand, within PS417_00640 at 131.585 kb on + strand, within PS417_00640 at 131.585 kb on + strand, within PS417_00640 at 131.747 kb on + strand, within PS417_00640 at 131.747 kb on + strand, within PS417_00640 at 131.748 kb on - strand, within PS417_00640 at 131.748 kb on - strand, within PS417_00640 at 131.748 kb on - strand, within PS417_00640 at 131.774 kb on + strand, within PS417_00640 at 131.774 kb on + strand, within PS417_00640 at 131.775 kb on - strand, within PS417_00640 at 131.775 kb on - strand, within PS417_00640 at 131.775 kb on - strand, within PS417_00640 at 131.987 kb on - strand at 132.024 kb on + strand at 132.024 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction P. simiae OR Antrim MOI 1 remove 129,293 + PS417_00630 0.13 -0.3 129,294 - PS417_00630 0.14 -5.1 129,642 - PS417_00630 0.47 -2.4 129,693 - PS417_00630 0.52 -2.0 129,693 - PS417_00630 0.52 -1.7 129,693 - PS417_00630 0.52 -1.7 129,831 - PS417_00630 0.66 -3.8 129,831 - PS417_00630 0.66 -3.2 129,906 - PS417_00630 0.73 -3.7 129,980 + PS417_00630 0.80 +0.3 129,980 + PS417_00630 0.80 -0.0 129,980 + PS417_00630 0.80 -0.0 129,980 + PS417_00630 0.80 +0.0 129,981 - PS417_00630 0.81 -2.9 129,981 - PS417_00630 0.81 -1.4 129,981 - PS417_00630 0.81 -4.1 130,142 + +0.5 130,143 - -0.5 130,143 - -5.2 130,143 - +0.7 130,143 - -2.4 130,143 - -1.8 130,398 - PS417_00635 0.25 -3.3 130,545 - PS417_00635 0.43 -2.3 130,587 + PS417_00635 0.48 -0.4 130,905 + PS417_00635 0.85 -0.2 130,905 + PS417_00635 0.85 +0.6 131,028 + +0.7 131,029 - -0.5 131,058 - -1.0 131,058 - +1.7 131,070 + +0.1 131,071 - -3.5 131,071 - -0.1 131,206 + PS417_00640 0.19 -1.3 131,321 + PS417_00640 0.33 -0.3 131,321 + PS417_00640 0.33 +0.1 131,585 + PS417_00640 0.64 -0.1 131,585 + PS417_00640 0.64 +0.2 131,747 + PS417_00640 0.83 -0.1 131,747 + PS417_00640 0.83 +0.0 131,748 - PS417_00640 0.83 -0.8 131,748 - PS417_00640 0.83 -0.3 131,748 - PS417_00640 0.83 -0.5 131,774 + PS417_00640 0.86 -0.3 131,774 + PS417_00640 0.86 -0.1 131,775 - PS417_00640 0.86 +0.2 131,775 - PS417_00640 0.86 -0.3 131,775 - PS417_00640 0.86 +0.4 131,987 - -1.3 132,024 + -1.0 132,024 + +0.2
Or see this region's nucleotide sequence