Strain Fitness in Pseudomonas simiae WCS417 around PS417_00620

Experiment: P. simiae OR Antrim MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_00615 and PS417_00620 are separated by 330 nucleotidesPS417_00620 and PS417_00625 are separated by 366 nucleotides PS417_00615: PS417_00615 - hypothetical protein, at 126,081 to 126,839 _00615 PS417_00620: PS417_00620 - GntR family transcriptional regulator, at 127,170 to 127,880 _00620 PS417_00625: PS417_00625 - taurine dioxygenase, at 128,247 to 129,140 _00625 Position (kb) 127 128Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1 2at 126.182 kb on + strand, within PS417_00615at 126.182 kb on + strand, within PS417_00615at 126.182 kb on + strand, within PS417_00615at 126.183 kb on - strand, within PS417_00615at 126.183 kb on - strand, within PS417_00615at 126.183 kb on - strand, within PS417_00615at 126.210 kb on + strand, within PS417_00615at 126.210 kb on + strand, within PS417_00615at 126.211 kb on - strand, within PS417_00615at 126.211 kb on - strand, within PS417_00615at 126.281 kb on + strand, within PS417_00615at 126.575 kb on - strand, within PS417_00615at 126.952 kb on + strandat 126.952 kb on + strandat 126.952 kb on + strandat 127.063 kb on + strandat 127.064 kb on - strandat 127.112 kb on + strandat 127.137 kb on + strandat 127.167 kb on - strandat 127.432 kb on + strand, within PS417_00620at 127.433 kb on - strand, within PS417_00620at 127.478 kb on - strand, within PS417_00620at 127.506 kb on - strand, within PS417_00620at 127.506 kb on - strand, within PS417_00620at 127.506 kb on - strand, within PS417_00620at 127.594 kb on + strand, within PS417_00620at 127.595 kb on - strand, within PS417_00620at 127.833 kb on - strandat 127.833 kb on - strandat 127.898 kb on + strandat 127.899 kb on - strandat 127.899 kb on - strandat 127.901 kb on + strandat 127.902 kb on - strandat 127.902 kb on - strandat 127.937 kb on - strandat 127.981 kb on + strandat 127.981 kb on + strandat 127.995 kb on + strandat 127.996 kb on - strandat 128.024 kb on + strandat 128.024 kb on + strandat 128.034 kb on + strandat 128.106 kb on + strandat 128.120 kb on - strandat 128.204 kb on + strandat 128.207 kb on - strandat 128.261 kb on + strandat 128.262 kb on - strandat 128.613 kb on + strand, within PS417_00625at 128.613 kb on + strand, within PS417_00625at 128.613 kb on + strand, within PS417_00625at 128.613 kb on + strand, within PS417_00625at 128.613 kb on + strand, within PS417_00625at 128.613 kb on + strand, within PS417_00625at 128.614 kb on - strand, within PS417_00625at 128.614 kb on - strand, within PS417_00625at 128.614 kb on - strand, within PS417_00625at 128.614 kb on - strand, within PS417_00625at 128.614 kb on - strand, within PS417_00625at 128.615 kb on + strand, within PS417_00625at 128.616 kb on - strand, within PS417_00625at 128.766 kb on + strand, within PS417_00625

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Per-strain Table

Position Strand Gene LocusTag Fraction P. simiae OR Antrim MOI 1
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126,182 + PS417_00615 0.13 +0.3
126,182 + PS417_00615 0.13 +1.6
126,182 + PS417_00615 0.13 -0.0
126,183 - PS417_00615 0.13 +0.7
126,183 - PS417_00615 0.13 -1.6
126,183 - PS417_00615 0.13 -0.2
126,210 + PS417_00615 0.17 +1.4
126,210 + PS417_00615 0.17 -0.6
126,211 - PS417_00615 0.17 +0.2
126,211 - PS417_00615 0.17 +0.1
126,281 + PS417_00615 0.26 +0.0
126,575 - PS417_00615 0.65 +0.6
126,952 + +0.7
126,952 + -2.8
126,952 + -2.1
127,063 + +1.7
127,064 - -0.3
127,112 + -0.8
127,137 + -0.5
127,167 - +1.5
127,432 + PS417_00620 0.37 +1.0
127,433 - PS417_00620 0.37 -1.1
127,478 - PS417_00620 0.43 +0.7
127,506 - PS417_00620 0.47 -0.6
127,506 - PS417_00620 0.47 +0.2
127,506 - PS417_00620 0.47 +0.4
127,594 + PS417_00620 0.60 +0.6
127,595 - PS417_00620 0.60 -1.2
127,833 - +1.2
127,833 - +0.6
127,898 + +0.1
127,899 - +2.0
127,899 - -1.4
127,901 + -0.5
127,902 - -0.9
127,902 - -1.0
127,937 - -1.1
127,981 + -0.2
127,981 + -0.4
127,995 + +0.5
127,996 - -5.5
128,024 + +2.2
128,024 + +0.5
128,034 + -2.1
128,106 + -0.2
128,120 - -2.6
128,204 + -2.3
128,207 - -1.7
128,261 + +1.1
128,262 - -4.1
128,613 + PS417_00625 0.41 -0.3
128,613 + PS417_00625 0.41 +1.9
128,613 + PS417_00625 0.41 -0.2
128,613 + PS417_00625 0.41 -3.3
128,613 + PS417_00625 0.41 -0.1
128,613 + PS417_00625 0.41 -1.4
128,614 - PS417_00625 0.41 -6.3
128,614 - PS417_00625 0.41 -1.7
128,614 - PS417_00625 0.41 -3.3
128,614 - PS417_00625 0.41 -4.9
128,614 - PS417_00625 0.41 -4.9
128,615 + PS417_00625 0.41 +0.6
128,616 - PS417_00625 0.41 -1.8
128,766 + PS417_00625 0.58 -1.7

Or see this region's nucleotide sequence