Strain Fitness in Pseudomonas simiae WCS417 around PS417_05950

Experiment: P. simiae OR Antrim MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. simiae OR Antrim MOI 1
1,322,190	+		PS417_05945	0.42	-0.2
1,322,191	-		PS417_05945	0.42	-0.5
1,322,509	+		PS417_05945	0.64	-0.9
1,322,509	+		PS417_05945	0.64	-0.6
1,322,509	+		PS417_05945	0.64	+0.3
1,322,509	+		PS417_05945	0.64	-1.7
1,322,509	+		PS417_05945	0.64	-2.0
1,322,510	-		PS417_05945	0.64	+1.6
1,322,563	-		PS417_05945	0.68	-0.3
1,322,635	-		PS417_05945	0.73	-0.2
1,322,773	-		PS417_05945	0.82	+0.2
1,322,840	-		PS417_05945	0.87	+0.1
1,323,073	+				+0.2
1,323,074	-				-2.4
1,323,074	-				-0.4
1,323,074	-				-0.7
1,323,113	+				+3.0
1,323,113	+				+0.9
1,323,170	+				+0.7
1,323,309	-		PS417_05950	0.16	+0.1
1,323,402	-		PS417_05950	0.26	+0.2
1,323,528	-				+0.0
1,323,528	-		PS417_05950	0.40	+0.2
1,323,528	-		PS417_05950	0.40	-0.4
1,323,680	+		PS417_05950	0.56	+0.6
1,323,681	-		PS417_05950	0.57	+0.8
1,323,683	-		PS417_05950	0.57	+2.0
1,323,719	+		PS417_05950	0.61	+0.3
1,324,047	-				-0.5
1,324,047	-				-1.6
1,324,047	-				-1.6
1,324,102	+				-0.4
1,324,102	+				+0.6
1,324,103	-				-0.7
1,324,121	-				-0.2
1,324,121	-				-2.5
1,324,168	-				-2.3
1,324,168	-				-0.3
1,324,189	+				+0.2
1,324,190	-				-0.3
1,324,217	+				-0.7
1,324,217	+				-0.6
1,324,226	+				-1.6
1,324,226	+				-0.2
1,324,227	-				+1.3
1,324,323	-		PS417_05955	0.11	-0.6
1,324,479	+				+0.0
1,324,512	+		PS417_05955	0.38	+0.5
1,324,512	+		PS417_05955	0.38	+0.1
1,324,512	+		PS417_05955	0.38	-0.3
1,324,512	+		PS417_05955	0.38	-0.1
1,324,818	+		PS417_05955	0.81	-0.7
1,324,818	+		PS417_05955	0.81	+1.6
1,324,818	+		PS417_05955	0.81	-0.1
1,324,818	+		PS417_05955	0.81	+0.0
1,324,819	-		PS417_05955	0.81	-0.0
1,324,819	-		PS417_05955	0.81	-0.1
1,324,819	-		PS417_05955	0.81	+0.0
1,324,870	-		PS417_05955	0.88	-0.3
1,324,937	-				+0.0
1,325,025	+				-1.6
1,325,026	-				+0.1
1,325,026	-				+0.6
1,325,065	+				-0.3
1,325,065	+				-0.4
1,325,065	+				+0.7
1,325,065	+				+0.9
1,325,065	+				+0.3
1,325,066	-				-0.0
1,325,066	-				-1.4
1,325,066	-				-0.0
1,325,066	-				-0.4
1,325,067	+				-0.1
1,325,067	+				-0.2
1,325,067	+				+0.5
1,325,068	-				-0.0
1,325,068	-				-0.2