Experiment: P. simiae OR Antrim MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_05775 and PS417_05780 overlap by 1 nucleotides PS417_05780 and PS417_05785 overlap by 8 nucleotides PS417_05785 and PS417_05790 are separated by 9 nucleotides
PS417_05775: PS417_05775 - tail tape measure protein, at 1,289,845 to 1,291,305
_05775
PS417_05780: PS417_05780 - hypothetical protein, at 1,291,305 to 1,291,688
_05780
PS417_05785: PS417_05785 - tail protein, at 1,291,681 to 1,291,893
_05785
PS417_05790: PS417_05790 - hypothetical protein, at 1,291,903 to 1,292,910
_05790
Position (kb) 1291
1292 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 1290.844 kb on + strand, within PS417_05775 at 1290.845 kb on - strand, within PS417_05775 at 1291.186 kb on + strand at 1291.334 kb on + strand at 1291.334 kb on + strand at 1291.363 kb on - strand, within PS417_05780 at 1291.564 kb on + strand, within PS417_05780 at 1291.687 kb on - strand at 1291.687 kb on - strand at 1291.698 kb on + strand at 1291.698 kb on + strand at 1291.698 kb on + strand at 1291.739 kb on + strand, within PS417_05785 at 1291.739 kb on + strand, within PS417_05785 at 1291.891 kb on + strand at 1291.918 kb on - strand at 1291.937 kb on - strand at 1292.115 kb on + strand, within PS417_05790 at 1292.422 kb on + strand, within PS417_05790 at 1292.422 kb on + strand, within PS417_05790 at 1292.422 kb on + strand, within PS417_05790 at 1292.563 kb on + strand, within PS417_05790 at 1292.867 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction P. simiae OR Antrim MOI 1 remove 1,290,844 + PS417_05775 0.68 -0.1 1,290,845 - PS417_05775 0.68 +0.5 1,291,186 + -0.9 1,291,334 + -0.3 1,291,334 + -0.9 1,291,363 - PS417_05780 0.15 +0.1 1,291,564 + PS417_05780 0.67 -0.7 1,291,687 - +0.1 1,291,687 - +1.3 1,291,698 + +0.2 1,291,698 + -0.2 1,291,698 + -0.1 1,291,739 + PS417_05785 0.27 -1.5 1,291,739 + PS417_05785 0.27 -0.2 1,291,891 + +1.1 1,291,918 - +1.0 1,291,937 - +0.4 1,292,115 + PS417_05790 0.21 -2.9 1,292,422 + PS417_05790 0.51 -0.6 1,292,422 + PS417_05790 0.51 -1.0 1,292,422 + PS417_05790 0.51 +0.5 1,292,563 + PS417_05790 0.65 -2.2 1,292,867 - -1.6
Or see this region's nucleotide sequence