Strain Fitness in Pseudomonas simiae WCS417 around PS417_05355

Experiment: P. simiae OR Antrim MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. simiae OR Antrim MOI 1
1,187,748	+		PS417_05345	0.29	+0.6
1,187,807	-		PS417_05345	0.41	+2.2
1,187,824	+		PS417_05345	0.44	-0.3
1,187,825	-		PS417_05345	0.44	-0.5
1,188,297	-		PS417_05350	0.38	+0.9
1,188,466	+		PS417_05350	0.74	-0.9
1,188,574	-				-1.3
1,188,584	+				+0.4
1,188,625	-				-0.0
1,188,735	+		PS417_05355	0.24	-1.0
1,188,799	+		PS417_05355	0.36	+0.2
1,188,799	+		PS417_05355	0.36	+0.2
1,188,799	+		PS417_05355	0.36	-1.4
1,188,800	-		PS417_05355	0.36	+1.6
1,188,800	-		PS417_05355	0.36	-1.4
1,188,800	-				+0.1
1,188,801	+		PS417_05355	0.36	-0.6
1,188,802	-		PS417_05355	0.36	-0.3
1,188,954	+		PS417_05355	0.64	+0.2
1,189,030	-		PS417_05355	0.78	+0.1
1,189,060	+		PS417_05355	0.83	-2.4
1,189,060	+		PS417_05355	0.83	-0.4
1,189,060	+		PS417_05355	0.83	-0.7
1,189,060	+		PS417_05355	0.83	-1.5
1,189,061	-		PS417_05355	0.83	-1.8
1,189,061	-		PS417_05355	0.83	+0.1
1,189,230	-				-2.7
1,189,263	+				+0.0
1,189,263	+				+0.0
1,189,263	+				+1.2
1,189,263	+				-0.1
1,189,263	+				-1.2
1,189,263	+				-0.4
1,189,263	+				+0.0
1,189,263	+				+0.5
1,189,263	+				-0.5
1,189,263	+				+0.9
1,189,264	-				+1.1
1,189,319	+				+0.9
1,189,319	+				+1.1
1,189,355	-		PS417_05360	0.11	+0.6
1,189,355	-		PS417_05360	0.11	+0.2
1,189,385	+		PS417_05360	0.14	+0.4
1,189,385	+		PS417_05360	0.14	-0.7
1,189,410	-		PS417_05360	0.16	-2.1
1,189,410	-		PS417_05360	0.16	+0.2
1,189,578	+		PS417_05360	0.34	+0.2
1,189,662	+		PS417_05360	0.43	-1.5
1,189,663	-		PS417_05360	0.43	-0.5
1,189,663	-		PS417_05360	0.43	-0.0
1,189,663	-		PS417_05360	0.43	-0.3
1,189,663	-		PS417_05360	0.43	-2.1
1,189,663	-		PS417_05360	0.43	-0.7
1,189,663	-		PS417_05360	0.43	-0.7
1,189,664	+		PS417_05360	0.43	-0.5
1,189,752	+		PS417_05360	0.52	+0.8
1,189,752	+		PS417_05360	0.52	+1.8
1,189,752	+		PS417_05360	0.52	+0.5
1,189,752	+		PS417_05360	0.52	+0.1
1,189,752	+		PS417_05360	0.52	+0.6
1,189,753	-		PS417_05360	0.52	+0.6
1,189,753	-		PS417_05360	0.52	-1.0
1,189,763	+		PS417_05360	0.53	-0.9
1,189,785	+		PS417_05360	0.55	+0.7
1,189,785	+		PS417_05360	0.55	-0.9
1,189,785	+		PS417_05360	0.55	-1.1
1,189,785	+		PS417_05360	0.55	+0.5
1,189,785	+		PS417_05360	0.55	+0.8
1,189,785	+		PS417_05360	0.55	-1.3
1,189,785	+		PS417_05360	0.55	-1.2
1,189,786	-		PS417_05360	0.55	+1.0
1,189,786	-		PS417_05360	0.55	+0.3
1,189,838	+		PS417_05360	0.61	-0.3
1,189,931	+		PS417_05360	0.70	-0.3
1,189,931	+		PS417_05360	0.70	+1.1
1,189,932	-		PS417_05360	0.70	+0.3
1,189,932	-		PS417_05360	0.70	+0.6
1,189,935	+		PS417_05360	0.71	-0.2
1,189,935	+		PS417_05360	0.71	+2.2
1,189,936	-		PS417_05360	0.71	+0.1
1,189,936	-		PS417_05360	0.71	+0.6
1,189,936	-		PS417_05360	0.71	+1.0
1,189,973	+		PS417_05360	0.75	-0.6
1,189,973	+		PS417_05360	0.75	-0.5
1,189,973	+		PS417_05360	0.75	+1.4
1,189,973	+		PS417_05360	0.75	-0.3
1,189,973	+		PS417_05360	0.75	-0.9
1,189,974	-		PS417_05360	0.75	+0.6
1,189,974	-		PS417_05360	0.75	+0.1
1,189,974	-		PS417_05360	0.75	+0.6
1,189,974	-		PS417_05360	0.75	+0.1
1,189,981	-		PS417_05360	0.76	-0.0
1,190,051	+		PS417_05360	0.83	+0.3
1,190,102	+		PS417_05360	0.88	+0.4
1,190,102	+		PS417_05360	0.88	+2.1