Strain Fitness in Pseudomonas simiae WCS417 around PS417_05305

Experiment: P. simiae OR Antrim MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. simiae OR Antrim MOI 1
1,177,849	-		PS417_05300	0.77	-3.9
1,177,864	-		PS417_05300	0.78	-2.3
1,177,916	+		PS417_05300	0.80	+0.0
1,177,917	-		PS417_05300	0.80	+1.6
1,178,357	+				-1.2
1,178,395	+				-0.8
1,178,395	+				-0.4
1,178,395	+				-0.5
1,178,396	-				-0.5
1,178,396	-				-0.8
1,178,422	+				-1.1
1,178,422	+				-0.1
1,178,422	+				-0.4
1,178,423	-				+2.9
1,178,447	+				+0.0
1,178,447	+				+0.1
1,178,448	-				-1.1
1,178,501	+				+1.1
1,178,501	+				-0.4
1,178,501	+				+1.9
1,178,505	+				-0.0
1,178,505	+				-0.0
1,178,505	+				+0.4
1,178,506	-				+0.3
1,178,530	+				+0.3
1,178,778	-				-0.9
1,178,852	+				+0.6
1,178,852	+				-1.9
1,179,224	+		PS417_05305	0.22	+0.1
1,179,224	+		PS417_05305	0.22	-0.2
1,179,224	+		PS417_05305	0.22	-0.3
1,179,224	+		PS417_05305	0.22	+0.3
1,179,224	+		PS417_05305	0.22	-1.5
1,179,225	-		PS417_05305	0.22	-0.2
1,179,225	-		PS417_05305	0.22	+1.6
1,179,225	-		PS417_05305	0.22	+1.2
1,179,231	-		PS417_05305	0.23	-2.3
1,179,302	+		PS417_05305	0.26	-1.4
1,179,302	+		PS417_05305	0.26	-0.8
1,179,303	-		PS417_05305	0.26	+0.1
1,179,320	+		PS417_05305	0.27	+0.6
1,179,321	-		PS417_05305	0.27	+0.2
1,179,325	+		PS417_05305	0.27	+0.1
1,179,422	+		PS417_05305	0.32	-0.1
1,179,455	+		PS417_05305	0.34	-0.2
1,179,455	+		PS417_05305	0.34	-0.1
1,179,465	-		PS417_05305	0.34	+2.1
1,179,489	-		PS417_05305	0.35	+1.5
1,179,530	+		PS417_05305	0.37	+2.3
1,179,530	+		PS417_05305	0.37	-1.5
1,179,834	-		PS417_05305	0.52	-1.0
1,179,850	+		PS417_05305	0.53	+0.0
1,179,850	+		PS417_05305	0.53	+1.9
1,179,899	+		PS417_05305	0.56	+0.2
1,179,916	+		PS417_05305	0.56	+0.2
1,179,924	+		PS417_05305	0.57	+0.4
1,179,924	+		PS417_05305	0.57	-0.3
1,179,925	-		PS417_05305	0.57	-1.1
1,179,991	+		PS417_05305	0.60	+0.2
1,179,992	-		PS417_05305	0.60	-1.3
1,179,992	-		PS417_05305	0.60	+1.1
1,179,992	-		PS417_05305	0.60	+0.2
1,180,016	+		PS417_05305	0.61	+0.1
1,180,017	-		PS417_05305	0.61	+1.6
1,180,017	-		PS417_05305	0.61	-0.9
1,180,017	-		PS417_05305	0.61	+1.3
1,180,017	-		PS417_05305	0.61	-0.3
1,180,071	-		PS417_05305	0.64	+1.4
1,180,236	+		PS417_05305	0.72	-0.1
1,180,236	+		PS417_05305	0.72	+1.0
1,180,237	-		PS417_05305	0.72	+2.0
1,180,237	-		PS417_05305	0.72	+0.5
1,180,356	+		PS417_05305	0.78	+2.1
1,180,357	-		PS417_05305	0.78	-0.2
1,180,357	-		PS417_05305	0.78	+0.8
1,180,463	+		PS417_05305	0.84	+0.4
1,180,568	+		PS417_05305	0.89	-0.7
1,180,594	-				+0.2
1,180,907	+				+0.0
1,180,913	+				+1.1
1,180,913	+				+0.6
1,180,914	-				-0.3
1,180,914	-				-1.0
1,180,918	-				-1.2
1,181,007	+		PS417_05310	0.31	+0.6
1,181,130	+		PS417_05310	0.83	+0.4
1,181,131	-		PS417_05310	0.84	+1.0
1,181,172	+				-1.2
1,181,172	+				-0.7
1,181,173	-				-1.3
1,181,173	-				-1.2
1,181,173	-				-0.5
1,181,348	-		PS417_05315	0.28	+0.2
1,181,446	+		PS417_05315	0.44	-0.9
1,181,446	+		PS417_05315	0.44	-1.9
1,181,447	-		PS417_05315	0.44	+2.4
1,181,447	-		PS417_05315	0.44	+0.2
1,181,447	-		PS417_05315	0.44	+0.2
1,181,447	-		PS417_05315	0.44	-0.1
1,181,606	-		PS417_05315	0.69	-0.4
1,181,617	+		PS417_05315	0.71	-0.6
1,181,618	-		PS417_05315	0.71	-0.7
1,181,618	-		PS417_05315	0.71	+0.6
1,181,626	+		PS417_05315	0.73	-0.7
1,181,626	+		PS417_05315	0.73	+0.4
1,181,627	-		PS417_05315	0.73	+0.1