Strain Fitness in Pseudomonas simiae WCS417 around PS417_05295

Experiment: P. simiae OR Antrim MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. simiae OR Antrim MOI 1
1,172,613	-				+1.2
1,172,613	-				+0.2
1,172,693	+				+0.1
1,172,693	+				+0.4
1,172,693	+				+1.1
1,172,693	+				+0.4
1,172,694	-				-0.4
1,172,694	-				+0.3
1,172,694	-				+0.6
1,172,694	-				+0.2
1,172,694	-				-0.2
1,172,697	+				+2.4
1,172,806	-				+1.9
1,172,806	-				-0.3
1,172,810	-				+0.7
1,172,810	-				+2.0
1,172,810	-				+0.8
1,172,810	-				-0.4
1,172,810	-				+0.3
1,173,002	-				+0.6
1,173,007	+				+0.5
1,173,007	+				+0.2
1,173,291	+				-0.0
1,173,292	-				+0.1
1,173,320	+				-0.0
1,173,320	+				-0.3
1,173,321	-				-0.4
1,173,324	+				+0.8
1,173,331	+				+0.2
1,173,332	-				-1.2
1,173,332	-				+0.1
1,173,332	-				+2.0
1,173,332	-				+0.2
1,173,335	+				+0.1
1,173,336	-				+0.2
1,173,336	-				+0.4
1,173,336	-				+0.1
1,173,442	-				+0.6
1,173,451	+				+1.2
1,173,452	-				+0.1
1,173,460	-				-0.4
1,173,541	-				+2.2
1,173,541	-				-1.0
1,173,595	-				+2.2
1,173,658	+				+0.2
1,173,659	-				+0.0
1,173,900	-		PS417_05295	0.14	-0.8
1,174,040	-		PS417_05295	0.20	+1.5
1,174,073	+		PS417_05295	0.21	+0.6
1,174,110	+		PS417_05295	0.23	-1.2
1,174,216	+		PS417_05295	0.27	+0.9
1,174,217	-		PS417_05295	0.27	-0.9
1,174,278	+		PS417_05295	0.30	+2.0
1,174,279	-		PS417_05295	0.30	+0.8
1,174,742	-		PS417_05295	0.50	+0.2
1,174,942	+		PS417_05295	0.58	-1.0
1,174,943	-		PS417_05295	0.58	+1.2
1,175,237	+		PS417_05295	0.71	+0.5
1,175,237	+		PS417_05295	0.71	+1.0
1,175,237	+		PS417_05295	0.71	-0.1
1,175,237	+		PS417_05295	0.71	+0.0
1,175,237	+		PS417_05295	0.71	+0.4
1,175,237	+		PS417_05295	0.71	-0.7
1,175,238	-		PS417_05295	0.71	+1.6
1,175,238	-		PS417_05295	0.71	+0.0
1,175,936	+				+0.4
1,176,006	+				-0.4
1,176,007	-				-1.7
1,176,060	+				+0.1
1,176,061	-				+0.3
1,176,061	-				-0.2
1,176,084	+				+0.3
1,176,084	+				+1.0
1,176,085	-				-1.0
1,176,157	-				-1.9
1,176,232	+		PS417_05300	0.11	+0.5
1,176,335	+		PS417_05300	0.15	+0.8
1,176,336	-		PS417_05300	0.15	-0.1
1,176,507	+		PS417_05300	0.22	-0.1
1,176,507	+		PS417_05300	0.22	-1.7
1,176,508	-		PS417_05300	0.22	-0.9
1,176,508	-		PS417_05300	0.22	-0.7
1,176,840	+		PS417_05300	0.36	+0.3
1,176,840	+		PS417_05300	0.36	+0.2
1,176,840	+		PS417_05300	0.36	+1.6
1,176,840	+		PS417_05300	0.36	-0.4
1,176,840	+		PS417_05300	0.36	+0.3
1,176,840	+		PS417_05300	0.36	-2.5