Experiment: P. simiae OR Antrim MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_00515 and PS417_00520 are separated by 68 nucleotides PS417_00520 and PS417_00525 are separated by 376 nucleotides
PS417_00515: PS417_00515 - membrane protein, at 103,404 to 104,171
_00515
PS417_00520: PS417_00520 - citrate transporter, at 104,240 to 105,547
_00520
PS417_00525: PS417_00525 - hypothetical protein, at 105,924 to 107,885
_00525
Position (kb) 104
105
106 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 103.253 kb on + strand at 103.253 kb on + strand at 103.253 kb on + strand at 103.253 kb on + strand at 103.253 kb on + strand at 103.254 kb on - strand at 103.254 kb on - strand at 103.254 kb on - strand at 103.259 kb on + strand at 103.260 kb on - strand at 103.266 kb on + strand at 103.267 kb on - strand at 103.267 kb on - strand at 103.273 kb on + strand at 103.274 kb on - strand at 103.274 kb on - strand at 103.274 kb on - strand at 103.274 kb on - strand at 103.274 kb on - strand at 103.307 kb on - strand at 103.307 kb on - strand at 103.307 kb on - strand at 103.310 kb on + strand at 103.310 kb on + strand at 103.311 kb on - strand at 103.311 kb on - strand at 103.311 kb on - strand at 103.311 kb on - strand at 103.311 kb on - strand at 103.311 kb on - strand at 103.525 kb on + strand, within PS417_00515 at 103.525 kb on + strand, within PS417_00515 at 103.531 kb on + strand, within PS417_00515 at 103.708 kb on - strand, within PS417_00515 at 103.789 kb on + strand, within PS417_00515 at 103.789 kb on + strand, within PS417_00515 at 103.789 kb on + strand, within PS417_00515 at 103.790 kb on - strand, within PS417_00515 at 103.790 kb on - strand, within PS417_00515 at 103.790 kb on - strand, within PS417_00515 at 103.790 kb on - strand, within PS417_00515 at 103.790 kb on - strand, within PS417_00515 at 103.790 kb on - strand, within PS417_00515 at 103.790 kb on - strand, within PS417_00515 at 103.790 kb on - strand, within PS417_00515 at 103.855 kb on + strand, within PS417_00515 at 103.856 kb on - strand, within PS417_00515 at 103.856 kb on - strand, within PS417_00515 at 103.856 kb on - strand, within PS417_00515 at 104.037 kb on - strand, within PS417_00515 at 104.048 kb on + strand, within PS417_00515 at 104.048 kb on + strand, within PS417_00515 at 104.049 kb on - strand, within PS417_00515 at 104.049 kb on - strand, within PS417_00515 at 104.049 kb on - strand, within PS417_00515 at 104.049 kb on - strand, within PS417_00515 at 104.049 kb on - strand, within PS417_00515 at 104.049 kb on - strand, within PS417_00515 at 104.195 kb on - strand at 104.243 kb on + strand at 104.243 kb on + strand at 104.243 kb on + strand at 104.244 kb on - strand at 104.244 kb on - strand at 104.291 kb on + strand at 104.377 kb on - strand, within PS417_00520 at 104.500 kb on - strand, within PS417_00520 at 104.500 kb on - strand, within PS417_00520 at 104.656 kb on + strand, within PS417_00520 at 104.657 kb on - strand, within PS417_00520 at 104.691 kb on - strand, within PS417_00520 at 104.742 kb on + strand, within PS417_00520 at 104.964 kb on + strand, within PS417_00520 at 105.195 kb on + strand, within PS417_00520 at 105.195 kb on + strand, within PS417_00520 at 105.195 kb on + strand, within PS417_00520 at 105.195 kb on + strand, within PS417_00520 at 105.196 kb on - strand, within PS417_00520 at 105.196 kb on - strand, within PS417_00520 at 105.196 kb on - strand, within PS417_00520 at 105.196 kb on - strand, within PS417_00520 at 105.196 kb on - strand, within PS417_00520 at 105.342 kb on + strand, within PS417_00520 at 105.342 kb on + strand, within PS417_00520 at 105.343 kb on - strand, within PS417_00520 at 105.547 kb on + strand at 105.548 kb on - strand at 105.553 kb on + strand at 105.554 kb on - strand at 105.554 kb on - strand at 105.565 kb on - strand at 105.690 kb on - strand at 105.733 kb on + strand at 105.734 kb on - strand at 105.783 kb on + strand at 105.783 kb on + strand at 105.784 kb on - strand at 105.784 kb on - strand at 105.784 kb on - strand at 105.784 kb on - strand at 105.798 kb on + strand at 105.925 kb on + strand at 105.953 kb on + strand at 106.265 kb on - strand, within PS417_00525 at 106.265 kb on - strand, within PS417_00525 at 106.493 kb on - strand, within PS417_00525
Per-strain Table
Position Strand Gene LocusTag Fraction P. simiae OR Antrim MOI 1 remove 103,253 + -0.5 103,253 + -1.1 103,253 + -0.1 103,253 + +1.2 103,253 + +0.6 103,254 - -0.2 103,254 - +0.7 103,254 - +0.1 103,259 + +3.9 103,260 - -0.5 103,266 + +1.3 103,267 - -1.3 103,267 - -0.4 103,273 + -0.8 103,274 - +0.2 103,274 - +1.0 103,274 - +0.4 103,274 - +0.6 103,274 - +0.7 103,307 - -2.2 103,307 - +0.5 103,307 - -0.3 103,310 + -0.7 103,310 + +0.6 103,311 - -1.1 103,311 - +0.2 103,311 - -0.1 103,311 - -0.2 103,311 - +0.1 103,311 - +0.3 103,525 + PS417_00515 0.16 +0.2 103,525 + PS417_00515 0.16 -0.3 103,531 + PS417_00515 0.17 -0.8 103,708 - PS417_00515 0.40 +1.4 103,789 + PS417_00515 0.50 -0.3 103,789 + PS417_00515 0.50 +0.6 103,789 + PS417_00515 0.50 -0.7 103,790 - PS417_00515 0.50 +1.7 103,790 - PS417_00515 0.50 -1.4 103,790 - PS417_00515 0.50 -0.1 103,790 - PS417_00515 0.50 +0.1 103,790 - PS417_00515 0.50 +0.7 103,790 - PS417_00515 0.50 +0.2 103,790 - PS417_00515 0.50 -1.0 103,790 - PS417_00515 0.50 +0.0 103,855 + PS417_00515 0.59 +0.0 103,856 - PS417_00515 0.59 +0.1 103,856 - PS417_00515 0.59 +3.3 103,856 - PS417_00515 0.59 -0.4 104,037 - PS417_00515 0.82 -0.3 104,048 + PS417_00515 0.84 -1.3 104,048 + PS417_00515 0.84 -0.4 104,049 - PS417_00515 0.84 +0.5 104,049 - PS417_00515 0.84 +0.9 104,049 - PS417_00515 0.84 -0.6 104,049 - PS417_00515 0.84 -1.3 104,049 - PS417_00515 0.84 -0.9 104,049 - PS417_00515 0.84 -0.4 104,195 - -1.1 104,243 + +0.6 104,243 + -0.7 104,243 + -1.3 104,244 - +0.4 104,244 - -0.7 104,291 + -0.3 104,377 - PS417_00520 0.10 -2.1 104,500 - PS417_00520 0.20 +1.7 104,500 - PS417_00520 0.20 +0.0 104,656 + PS417_00520 0.32 -0.5 104,657 - PS417_00520 0.32 +0.3 104,691 - PS417_00520 0.34 -0.7 104,742 + PS417_00520 0.38 +0.7 104,964 + PS417_00520 0.55 -0.1 105,195 + PS417_00520 0.73 +0.2 105,195 + PS417_00520 0.73 -1.6 105,195 + PS417_00520 0.73 -1.5 105,195 + PS417_00520 0.73 -1.7 105,196 - PS417_00520 0.73 -2.1 105,196 - PS417_00520 0.73 -0.5 105,196 - PS417_00520 0.73 -0.8 105,196 - PS417_00520 0.73 -0.5 105,196 - PS417_00520 0.73 -2.3 105,342 + PS417_00520 0.84 -0.3 105,342 + PS417_00520 0.84 -0.8 105,343 - PS417_00520 0.84 -1.3 105,547 + +0.2 105,548 - +0.3 105,553 + +0.7 105,554 - -0.1 105,554 - -0.8 105,565 - -0.3 105,690 - +0.7 105,733 + -2.0 105,734 - +0.4 105,783 + +0.7 105,783 + -0.1 105,784 - +0.2 105,784 - -0.0 105,784 - +0.4 105,784 - +1.4 105,798 + +0.0 105,925 + +0.1 105,953 + +0.3 106,265 - PS417_00525 0.17 -1.6 106,265 - PS417_00525 0.17 +2.1 106,493 - PS417_00525 0.29 -0.8
Or see this region's nucleotide sequence