Experiment: P. simiae OR Antrim MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_00500 and PS417_00505 are separated by 72 nucleotides PS417_00505 and PS417_00510 are separated by 57 nucleotides
PS417_00500: PS417_00500 - membrane protein, at 98,990 to 100,021
_00500
PS417_00505: PS417_00505 - peptidase M16, at 100,094 to 101,476
_00505
PS417_00510: PS417_00510 - membrane protein, at 101,534 to 103,192
_00510
Position (kb) 100
101
102 Strain fitness (log2 ratio) -2
-1
0
1 at 99.158 kb on - strand, within PS417_00500 at 99.208 kb on - strand, within PS417_00500 at 99.208 kb on - strand, within PS417_00500 at 99.517 kb on - strand, within PS417_00500 at 99.517 kb on - strand, within PS417_00500 at 99.517 kb on - strand, within PS417_00500 at 99.631 kb on - strand, within PS417_00500 at 99.634 kb on - strand, within PS417_00500 at 100.064 kb on + strand at 100.096 kb on - strand at 100.113 kb on + strand at 100.133 kb on + strand at 100.133 kb on + strand at 100.133 kb on + strand at 100.185 kb on + strand at 100.185 kb on + strand at 100.336 kb on - strand, within PS417_00505 at 100.463 kb on + strand, within PS417_00505 at 100.561 kb on - strand, within PS417_00505 at 100.561 kb on - strand, within PS417_00505 at 100.612 kb on - strand, within PS417_00505 at 100.629 kb on + strand, within PS417_00505 at 100.629 kb on + strand, within PS417_00505 at 100.630 kb on - strand, within PS417_00505 at 101.398 kb on - strand at 101.398 kb on - strand at 101.451 kb on - strand at 101.476 kb on + strand at 101.477 kb on - strand at 101.507 kb on + strand at 101.508 kb on - strand at 101.560 kb on + strand at 101.563 kb on - strand at 101.604 kb on - strand at 101.607 kb on + strand at 101.607 kb on + strand at 101.607 kb on + strand at 101.608 kb on - strand at 101.608 kb on - strand at 101.608 kb on - strand at 102.348 kb on + strand, within PS417_00510
Per-strain Table
Position Strand Gene LocusTag Fraction P. simiae OR Antrim MOI 1 remove 99,158 - PS417_00500 0.16 -0.1 99,208 - PS417_00500 0.21 -0.2 99,208 - PS417_00500 0.21 -0.5 99,517 - PS417_00500 0.51 -0.1 99,517 - PS417_00500 0.51 -0.2 99,517 - PS417_00500 0.51 -0.1 99,631 - PS417_00500 0.62 +0.7 99,634 - PS417_00500 0.62 -1.2 100,064 + +0.0 100,096 - -2.1 100,113 + -0.0 100,133 + -1.3 100,133 + +0.5 100,133 + +0.7 100,185 + -0.4 100,185 + +0.1 100,336 - PS417_00505 0.17 -1.1 100,463 + PS417_00505 0.27 -0.6 100,561 - PS417_00505 0.34 +0.2 100,561 - PS417_00505 0.34 -0.5 100,612 - PS417_00505 0.37 -0.3 100,629 + PS417_00505 0.39 -1.2 100,629 + PS417_00505 0.39 -0.0 100,630 - PS417_00505 0.39 +0.5 101,398 - -0.4 101,398 - -0.3 101,451 - -0.8 101,476 + +0.2 101,477 - -0.9 101,507 + +0.4 101,508 - +0.6 101,560 + -0.5 101,563 - -0.8 101,604 - -0.1 101,607 + -0.7 101,607 + +0.2 101,607 + +0.9 101,608 - -0.3 101,608 - +0.6 101,608 - +0.1 102,348 + PS417_00510 0.49 -0.1
Or see this region's nucleotide sequence