Experiment: P. simiae OR Antrim MOI 10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_03925 and PS417_03930 are separated by 191 nucleotides PS417_03930 and PS417_03935 are separated by 61 nucleotides PS417_03935 and PS417_03940 overlap by 4 nucleotides
PS417_03925: PS417_03925 - nicotinate-nucleotide pyrophosphorylase, at 876,190 to 877,038
_03925
PS417_03930: PS417_03930 - thymidine phosphorylase, at 877,230 to 879,353
_03930
PS417_03935: PS417_03935 - N-acetyl-anhydromuranmyl-L-alanine amidase, at 879,415 to 879,978
_03935
PS417_03940: PS417_03940 - membrane protein, at 879,975 to 880,811
_03940
Position (kb) 877
878
879
880 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 876.257 kb on + strand at 876.257 kb on + strand at 876.257 kb on + strand at 876.258 kb on - strand at 876.258 kb on - strand at 876.258 kb on - strand at 876.258 kb on - strand at 876.360 kb on + strand, within PS417_03925 at 876.361 kb on - strand, within PS417_03925 at 876.548 kb on + strand, within PS417_03925 at 876.548 kb on + strand, within PS417_03925 at 876.549 kb on - strand, within PS417_03925 at 876.594 kb on - strand, within PS417_03925 at 877.071 kb on - strand at 877.110 kb on + strand at 877.110 kb on + strand at 877.160 kb on - strand at 877.304 kb on - strand at 877.430 kb on + strand at 877.430 kb on + strand at 877.430 kb on + strand at 877.430 kb on + strand at 877.617 kb on - strand, within PS417_03930 at 877.830 kb on + strand, within PS417_03930 at 878.130 kb on + strand, within PS417_03930 at 878.130 kb on + strand, within PS417_03930 at 878.130 kb on + strand, within PS417_03930 at 878.130 kb on + strand, within PS417_03930 at 878.130 kb on + strand, within PS417_03930 at 878.130 kb on + strand, within PS417_03930 at 878.130 kb on + strand, within PS417_03930 at 878.131 kb on - strand, within PS417_03930 at 878.131 kb on - strand, within PS417_03930 at 878.134 kb on + strand, within PS417_03930 at 878.135 kb on - strand, within PS417_03930 at 878.313 kb on + strand, within PS417_03930 at 878.313 kb on + strand, within PS417_03930 at 878.314 kb on - strand, within PS417_03930 at 878.314 kb on - strand, within PS417_03930 at 878.463 kb on + strand, within PS417_03930 at 878.463 kb on + strand, within PS417_03930 at 878.463 kb on + strand, within PS417_03930 at 878.464 kb on - strand, within PS417_03930 at 879.022 kb on + strand, within PS417_03930 at 879.023 kb on - strand, within PS417_03930 at 879.186 kb on + strand at 879.187 kb on - strand at 879.187 kb on - strand at 879.187 kb on - strand at 879.187 kb on - strand at 879.187 kb on - strand at 879.187 kb on - strand at 879.187 kb on - strand at 879.187 kb on - strand at 879.414 kb on + strand at 879.520 kb on - strand, within PS417_03935 at 879.604 kb on + strand, within PS417_03935 at 879.604 kb on + strand, within PS417_03935 at 879.626 kb on + strand, within PS417_03935 at 879.626 kb on + strand, within PS417_03935 at 879.626 kb on + strand, within PS417_03935 at 879.627 kb on - strand, within PS417_03935 at 880.003 kb on + strand at 880.136 kb on - strand, within PS417_03940 at 880.136 kb on - strand, within PS417_03940 at 880.139 kb on - strand, within PS417_03940 at 880.231 kb on - strand, within PS417_03940 at 880.231 kb on - strand, within PS417_03940 at 880.231 kb on - strand, within PS417_03940 at 880.231 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction P. simiae OR Antrim MOI 10 remove 876,257 + -0.2 876,257 + +2.0 876,257 + +0.2 876,258 - +0.5 876,258 - -1.4 876,258 - -0.1 876,258 - +1.7 876,360 + PS417_03925 0.20 +0.5 876,361 - PS417_03925 0.20 +0.2 876,548 + PS417_03925 0.42 +1.0 876,548 + PS417_03925 0.42 +1.2 876,549 - PS417_03925 0.42 -0.0 876,594 - PS417_03925 0.48 -0.2 877,071 - -1.2 877,110 + +1.3 877,110 + +1.6 877,160 - -1.8 877,304 - -4.3 877,430 + -1.2 877,430 + -1.0 877,430 + -2.8 877,430 + -1.4 877,617 - PS417_03930 0.18 -2.2 877,830 + PS417_03930 0.28 -3.8 878,130 + PS417_03930 0.42 -0.2 878,130 + PS417_03930 0.42 -2.2 878,130 + PS417_03930 0.42 -3.4 878,130 + PS417_03930 0.42 -4.4 878,130 + PS417_03930 0.42 -2.1 878,130 + PS417_03930 0.42 -1.8 878,130 + PS417_03930 0.42 -3.5 878,131 - PS417_03930 0.42 -2.5 878,131 - PS417_03930 0.42 -4.3 878,134 + PS417_03930 0.43 -0.6 878,135 - PS417_03930 0.43 -4.3 878,313 + PS417_03930 0.51 -4.6 878,313 + PS417_03930 0.51 -0.6 878,314 - PS417_03930 0.51 +1.9 878,314 - PS417_03930 0.51 -0.2 878,463 + PS417_03930 0.58 -4.1 878,463 + PS417_03930 0.58 -3.6 878,463 + PS417_03930 0.58 +0.4 878,464 - PS417_03930 0.58 -4.7 879,022 + PS417_03930 0.84 -2.4 879,023 - PS417_03930 0.84 -4.3 879,186 + -1.8 879,187 - -3.4 879,187 - -3.7 879,187 - -2.3 879,187 - -0.2 879,187 - -1.8 879,187 - -2.2 879,187 - -3.1 879,187 - -2.4 879,414 + +1.2 879,520 - PS417_03935 0.19 -1.0 879,604 + PS417_03935 0.34 +0.7 879,604 + PS417_03935 0.34 +0.7 879,626 + PS417_03935 0.37 +1.0 879,626 + PS417_03935 0.37 +1.9 879,626 + PS417_03935 0.37 +0.1 879,627 - PS417_03935 0.38 +0.0 880,003 + -0.3 880,136 - PS417_03940 0.19 +0.1 880,136 - PS417_03940 0.19 -1.6 880,139 - PS417_03940 0.20 +0.4 880,231 - PS417_03940 0.31 -0.4 880,231 - PS417_03940 0.31 -0.4 880,231 - PS417_03940 0.31 -0.2 880,231 - +1.4
Or see this region's nucleotide sequence