Experiment: P. simiae OR Antrim MOI 10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_02010 and PS417_02015 are separated by 118 nucleotides PS417_02015 and PS417_02020 are separated by 123 nucleotides
PS417_02010: PS417_02010 - uroporphyrinogen decarboxylase, at 449,593 to 450,660
_02010
PS417_02015: PS417_02015 - membrane protein, at 450,779 to 452,053
_02015
PS417_02020: PS417_02020 - LysR family transcriptional regulator, at 452,177 to 453,070
_02020
Position (kb) 450
451
452
453 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 450.659 kb on - strand at 450.729 kb on + strand at 450.922 kb on + strand, within PS417_02015 at 450.936 kb on + strand, within PS417_02015 at 450.937 kb on - strand, within PS417_02015 at 450.939 kb on + strand, within PS417_02015 at 450.939 kb on + strand, within PS417_02015 at 450.951 kb on + strand, within PS417_02015 at 451.182 kb on + strand, within PS417_02015 at 451.182 kb on + strand, within PS417_02015 at 451.182 kb on + strand, within PS417_02015 at 451.182 kb on + strand, within PS417_02015 at 451.183 kb on - strand, within PS417_02015 at 451.187 kb on - strand, within PS417_02015 at 451.197 kb on + strand, within PS417_02015 at 451.198 kb on - strand, within PS417_02015 at 451.198 kb on - strand, within PS417_02015 at 451.240 kb on - strand, within PS417_02015 at 451.269 kb on + strand, within PS417_02015 at 451.269 kb on + strand, within PS417_02015 at 451.270 kb on - strand, within PS417_02015 at 451.270 kb on - strand, within PS417_02015 at 451.554 kb on + strand, within PS417_02015 at 451.555 kb on - strand, within PS417_02015 at 451.555 kb on - strand, within PS417_02015 at 451.555 kb on - strand, within PS417_02015 at 451.555 kb on - strand, within PS417_02015 at 451.606 kb on - strand, within PS417_02015 at 451.606 kb on - strand, within PS417_02015 at 451.665 kb on - strand, within PS417_02015 at 451.891 kb on - strand, within PS417_02015 at 451.971 kb on + strand at 451.994 kb on + strand at 451.994 kb on + strand at 451.995 kb on - strand at 452.103 kb on + strand at 452.103 kb on + strand at 452.103 kb on + strand at 452.104 kb on - strand at 452.105 kb on + strand at 452.105 kb on + strand at 452.105 kb on + strand at 452.106 kb on - strand at 452.106 kb on - strand at 452.106 kb on - strand at 452.106 kb on - strand at 452.106 kb on - strand at 452.130 kb on - strand at 452.284 kb on - strand, within PS417_02020 at 452.418 kb on + strand, within PS417_02020 at 452.419 kb on - strand, within PS417_02020 at 452.486 kb on - strand, within PS417_02020 at 452.793 kb on - strand, within PS417_02020 at 452.922 kb on - strand, within PS417_02020 at 452.951 kb on + strand, within PS417_02020 at 452.951 kb on + strand, within PS417_02020 at 452.989 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction P. simiae OR Antrim MOI 10 remove 450,659 - +0.1 450,729 + +0.9 450,922 + PS417_02015 0.11 -1.0 450,936 + PS417_02015 0.12 -1.0 450,937 - PS417_02015 0.12 -0.2 450,939 + PS417_02015 0.13 -2.5 450,939 + PS417_02015 0.13 -0.7 450,951 + PS417_02015 0.13 +0.3 451,182 + PS417_02015 0.32 -0.9 451,182 + PS417_02015 0.32 -2.2 451,182 + PS417_02015 0.32 +1.4 451,182 + PS417_02015 0.32 -0.1 451,183 - PS417_02015 0.32 -0.7 451,187 - PS417_02015 0.32 +0.5 451,197 + PS417_02015 0.33 -3.5 451,198 - PS417_02015 0.33 +0.1 451,198 - PS417_02015 0.33 +0.2 451,240 - PS417_02015 0.36 -1.3 451,269 + PS417_02015 0.38 +0.8 451,269 + PS417_02015 0.38 +0.8 451,270 - PS417_02015 0.39 -0.5 451,270 - PS417_02015 0.39 -3.6 451,554 + PS417_02015 0.61 +0.5 451,555 - PS417_02015 0.61 +0.3 451,555 - PS417_02015 0.61 +0.4 451,555 - PS417_02015 0.61 +0.7 451,555 - PS417_02015 0.61 -0.5 451,606 - PS417_02015 0.65 +0.8 451,606 - PS417_02015 0.65 -1.6 451,665 - PS417_02015 0.69 -3.3 451,891 - PS417_02015 0.87 +0.2 451,971 + +1.1 451,994 + +0.4 451,994 + -2.7 451,995 - -1.9 452,103 + +1.4 452,103 + +1.2 452,103 + -0.0 452,104 - -0.0 452,105 + +2.0 452,105 + -0.0 452,105 + +0.2 452,106 - -0.1 452,106 - +0.0 452,106 - +0.3 452,106 - -0.8 452,106 - -0.1 452,130 - -0.7 452,284 - PS417_02020 0.12 -0.1 452,418 + PS417_02020 0.27 +0.7 452,419 - PS417_02020 0.27 +0.4 452,486 - PS417_02020 0.35 +1.5 452,793 - PS417_02020 0.69 -0.6 452,922 - PS417_02020 0.83 -1.6 452,951 + PS417_02020 0.87 -0.5 452,951 + PS417_02020 0.87 -0.8 452,989 - -0.2
Or see this region's nucleotide sequence