Experiment: P. simiae OR Antrim MOI 10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_01515 and PS417_01520 are separated by 175 nucleotides PS417_01520 and PS417_01525 are separated by 87 nucleotides
PS417_01515: PS417_01515 - alpha/beta hydrolase, at 335,633 to 336,577
_01515
PS417_01520: PS417_01520 - arsenic resistance protein, at 336,753 to 337,718
_01520
PS417_01525: PS417_01525 - membrane protein, at 337,806 to 339,398
_01525
Position (kb) 336
337
338 Strain fitness (log2 ratio) -2
-1
0
1
2 at 335.795 kb on + strand at 335.796 kb on - strand, within PS417_01515 at 335.796 kb on - strand, within PS417_01515 at 335.844 kb on + strand, within PS417_01515 at 335.845 kb on - strand, within PS417_01515 at 335.852 kb on + strand, within PS417_01515 at 335.870 kb on + strand, within PS417_01515 at 335.941 kb on + strand, within PS417_01515 at 336.223 kb on + strand, within PS417_01515 at 336.224 kb on - strand, within PS417_01515 at 336.373 kb on - strand, within PS417_01515 at 336.649 kb on + strand at 336.717 kb on - strand at 336.717 kb on - strand at 336.752 kb on + strand at 336.753 kb on - strand at 336.894 kb on + strand, within PS417_01520 at 336.894 kb on + strand, within PS417_01520 at 337.004 kb on - strand, within PS417_01520 at 337.063 kb on + strand, within PS417_01520 at 337.067 kb on - strand, within PS417_01520 at 337.067 kb on - strand, within PS417_01520 at 337.086 kb on + strand, within PS417_01520 at 337.185 kb on + strand, within PS417_01520 at 337.185 kb on + strand, within PS417_01520 at 337.185 kb on + strand, within PS417_01520 at 337.289 kb on - strand, within PS417_01520 at 337.455 kb on + strand, within PS417_01520 at 337.455 kb on + strand, within PS417_01520 at 337.455 kb on + strand, within PS417_01520 at 337.674 kb on + strand at 337.674 kb on + strand at 337.773 kb on + strand at 337.773 kb on + strand at 337.773 kb on + strand at 337.774 kb on - strand at 337.774 kb on - strand at 337.774 kb on - strand at 337.789 kb on - strand at 337.840 kb on + strand at 338.250 kb on + strand, within PS417_01525 at 338.250 kb on + strand, within PS417_01525 at 338.368 kb on - strand, within PS417_01525 at 338.368 kb on - strand, within PS417_01525 at 338.431 kb on + strand, within PS417_01525
Per-strain Table
Position Strand Gene LocusTag Fraction P. simiae OR Antrim MOI 10 remove 335,795 + +2.3 335,796 - PS417_01515 0.17 +0.4 335,796 - PS417_01515 0.17 +0.9 335,844 + PS417_01515 0.22 -0.1 335,845 - PS417_01515 0.22 -0.6 335,852 + PS417_01515 0.23 +0.6 335,870 + PS417_01515 0.25 +0.1 335,941 + PS417_01515 0.33 -0.5 336,223 + PS417_01515 0.62 +0.5 336,224 - PS417_01515 0.63 -0.2 336,373 - PS417_01515 0.78 +0.3 336,649 + -0.1 336,717 - -0.1 336,717 - -1.3 336,752 + +0.3 336,753 - -0.4 336,894 + PS417_01520 0.15 -0.4 336,894 + PS417_01520 0.15 +0.1 337,004 - PS417_01520 0.26 +0.1 337,063 + PS417_01520 0.32 -0.6 337,067 - PS417_01520 0.33 -0.5 337,067 - PS417_01520 0.33 -2.2 337,086 + PS417_01520 0.34 -1.0 337,185 + PS417_01520 0.45 +0.1 337,185 + PS417_01520 0.45 +0.7 337,185 + PS417_01520 0.45 -0.7 337,289 - PS417_01520 0.55 -0.2 337,455 + PS417_01520 0.73 +1.4 337,455 + PS417_01520 0.73 -0.6 337,455 + PS417_01520 0.73 -0.3 337,674 + +0.2 337,674 + -1.6 337,773 + +0.2 337,773 + +0.7 337,773 + +0.2 337,774 - -0.3 337,774 - +0.4 337,774 - +0.8 337,789 - -1.0 337,840 + -1.8 338,250 + PS417_01525 0.28 -0.4 338,250 + PS417_01525 0.28 +1.0 338,368 - PS417_01525 0.35 +0.2 338,368 - PS417_01525 0.35 +0.7 338,431 + PS417_01525 0.39 -1.4
Or see this region's nucleotide sequence