Strain Fitness in Pseudomonas simiae WCS417 around PS417_01235

Experiment: P. simiae OR Antrim MOI 10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_01220 and PS417_01230 are separated by 610 nucleotidesPS417_01230 and PS417_01235 overlap by 28 nucleotidesPS417_01235 and PS417_01245 are separated by 345 nucleotides PS417_01220: PS417_01220 - hypothetical protein, at 267,911 to 268,267 _01220 PS417_01230: PS417_01230 - hypothetical protein, at 268,878 to 269,123 _01230 PS417_01235: PS417_01235 - cell division protein Fic, at 269,096 to 269,695 _01235 PS417_01245: PS417_01245 - hypothetical protein, at 270,041 to 271,216 _01245 Position (kb) 269 270Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 268.358 kb on + strandat 268.358 kb on + strandat 268.359 kb on - strandat 268.359 kb on - strandat 268.397 kb on + strandat 268.397 kb on + strandat 268.397 kb on + strandat 268.397 kb on + strandat 268.397 kb on + strandat 268.401 kb on + strandat 268.401 kb on + strandat 268.401 kb on + strandat 268.401 kb on + strandat 268.402 kb on - strandat 268.402 kb on - strandat 268.402 kb on - strandat 268.406 kb on + strandat 268.406 kb on + strandat 268.409 kb on + strandat 268.409 kb on + strandat 268.409 kb on + strandat 268.423 kb on + strandat 268.500 kb on + strandat 268.501 kb on - strandat 268.501 kb on - strandat 268.501 kb on - strandat 268.504 kb on + strandat 268.504 kb on + strandat 268.598 kb on + strandat 268.598 kb on + strandat 268.599 kb on - strandat 268.599 kb on - strandat 268.599 kb on - strandat 268.648 kb on + strandat 268.652 kb on + strandat 268.652 kb on + strandat 268.652 kb on + strandat 268.652 kb on + strandat 268.652 kb on + strandat 268.653 kb on - strandat 268.820 kb on + strandat 268.820 kb on + strandat 269.011 kb on - strand, within PS417_01230at 269.011 kb on - strand, within PS417_01230at 269.014 kb on + strand, within PS417_01230at 269.015 kb on - strand, within PS417_01230at 269.015 kb on - strand, within PS417_01230at 269.078 kb on + strand, within PS417_01230at 269.119 kb on + strandat 269.120 kb on - strandat 269.173 kb on + strand, within PS417_01235at 269.173 kb on + strand, within PS417_01235at 269.361 kb on + strand, within PS417_01235at 269.361 kb on + strand, within PS417_01235at 269.362 kb on - strand, within PS417_01235at 269.485 kb on - strand, within PS417_01235at 269.512 kb on + strand, within PS417_01235at 269.513 kb on - strand, within PS417_01235at 269.513 kb on - strand, within PS417_01235at 269.513 kb on - strand, within PS417_01235at 269.535 kb on + strand, within PS417_01235at 269.536 kb on - strand, within PS417_01235at 269.828 kb on + strandat 269.873 kb on + strandat 269.899 kb on + strandat 269.949 kb on + strandat 269.982 kb on + strandat 269.983 kb on - strandat 269.983 kb on - strandat 269.983 kb on - strandat 270.004 kb on + strandat 270.005 kb on - strandat 270.022 kb on + strandat 270.023 kb on - strandat 270.023 kb on - strandat 270.026 kb on + strandat 270.026 kb on + strandat 270.027 kb on - strandat 270.027 kb on - strandat 270.036 kb on + strandat 270.037 kb on - strandat 270.037 kb on - strandat 270.124 kb on - strandat 270.332 kb on + strand, within PS417_01245at 270.332 kb on + strand, within PS417_01245at 270.332 kb on + strand, within PS417_01245at 270.333 kb on - strand, within PS417_01245at 270.333 kb on - strand, within PS417_01245at 270.500 kb on + strand, within PS417_01245at 270.536 kb on + strand, within PS417_01245at 270.548 kb on + strand, within PS417_01245at 270.548 kb on + strand, within PS417_01245at 270.549 kb on - strand, within PS417_01245at 270.549 kb on - strand, within PS417_01245at 270.549 kb on - strand, within PS417_01245at 270.549 kb on - strand, within PS417_01245at 270.549 kb on - strand, within PS417_01245at 270.555 kb on - strand, within PS417_01245at 270.555 kb on - strand, within PS417_01245at 270.633 kb on - strand, within PS417_01245at 270.633 kb on - strand, within PS417_01245at 270.633 kb on - strand, within PS417_01245at 270.633 kb on - strand, within PS417_01245at 270.655 kb on + strand, within PS417_01245at 270.659 kb on + strand, within PS417_01245at 270.659 kb on + strand, within PS417_01245at 270.662 kb on + strand, within PS417_01245at 270.662 kb on + strand, within PS417_01245at 270.662 kb on + strand, within PS417_01245

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Per-strain Table

Position Strand Gene LocusTag Fraction P. simiae OR Antrim MOI 10
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268,358 + +0.2
268,358 + -2.2
268,359 - -1.1
268,359 - +0.4
268,397 + +2.1
268,397 + +0.3
268,397 + +0.7
268,397 + +0.3
268,397 + +0.6
268,401 + -0.6
268,401 + -0.3
268,401 + -1.6
268,401 + +1.3
268,402 - +1.0
268,402 - -0.8
268,402 - -0.2
268,406 + +0.8
268,406 + -2.0
268,409 + -1.9
268,409 + +0.3
268,409 + -0.6
268,423 + -1.5
268,500 + -1.2
268,501 - -1.5
268,501 - -0.6
268,501 - -0.2
268,504 + -0.6
268,504 + -1.2
268,598 + -0.3
268,598 + +0.2
268,599 - +0.3
268,599 - +0.0
268,599 - -0.1
268,648 + +0.4
268,652 + +0.3
268,652 + +0.7
268,652 + +1.1
268,652 + -0.4
268,652 + -0.1
268,653 - +0.0
268,820 + +0.7
268,820 + -2.6
269,011 - PS417_01230 0.54 +0.6
269,011 - PS417_01230 0.54 -1.4
269,014 + PS417_01230 0.55 +0.0
269,015 - PS417_01230 0.56 -3.2
269,015 - PS417_01230 0.56 +1.4
269,078 + PS417_01230 0.81 +0.3
269,119 + +1.9
269,120 - -0.1
269,173 + PS417_01235 0.13 +2.0
269,173 + PS417_01235 0.13 -0.3
269,361 + PS417_01235 0.44 +0.1
269,361 + PS417_01235 0.44 +0.3
269,362 - PS417_01235 0.44 +1.2
269,485 - PS417_01235 0.65 +0.5
269,512 + PS417_01235 0.69 -0.5
269,513 - PS417_01235 0.69 +0.4
269,513 - PS417_01235 0.69 +0.3
269,513 - PS417_01235 0.69 -0.9
269,535 + PS417_01235 0.73 +0.4
269,536 - PS417_01235 0.73 +0.5
269,828 + +0.9
269,873 + +2.5
269,899 + +0.4
269,949 + +1.0
269,982 + -0.2
269,983 - +0.7
269,983 - -0.0
269,983 - +0.1
270,004 + -0.6
270,005 - +0.9
270,022 + +0.8
270,023 - -0.4
270,023 - +0.4
270,026 + +0.2
270,026 + +0.8
270,027 - +0.0
270,027 - +0.2
270,036 + -0.1
270,037 - -0.5
270,037 - -0.1
270,124 - -0.5
270,332 + PS417_01245 0.25 -0.4
270,332 + PS417_01245 0.25 +1.3
270,332 + PS417_01245 0.25 -0.2
270,333 - PS417_01245 0.25 -2.5
270,333 - PS417_01245 0.25 -0.1
270,500 + PS417_01245 0.39 +0.2
270,536 + PS417_01245 0.42 +1.3
270,548 + PS417_01245 0.43 +0.9
270,548 + PS417_01245 0.43 +2.3
270,549 - PS417_01245 0.43 -2.3
270,549 - PS417_01245 0.43 +1.1
270,549 - PS417_01245 0.43 +0.2
270,549 - PS417_01245 0.43 +0.4
270,549 - PS417_01245 0.43 +0.4
270,555 - PS417_01245 0.44 +1.4
270,555 - PS417_01245 0.44 -1.0
270,633 - PS417_01245 0.50 +0.3
270,633 - PS417_01245 0.50 +0.7
270,633 - PS417_01245 0.50 +1.4
270,633 - PS417_01245 0.50 -1.4
270,655 + PS417_01245 0.52 -0.6
270,659 + PS417_01245 0.53 +1.3
270,659 + PS417_01245 0.53 +0.1
270,662 + PS417_01245 0.53 -0.7
270,662 + PS417_01245 0.53 -2.7
270,662 + PS417_01245 0.53 +0.3

Or see this region's nucleotide sequence