Experiment: P. simiae OR Antrim MOI 10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_00865 and PS417_00870 overlap by 4 nucleotides PS417_00870 and PS417_00875 are separated by 527 nucleotides PS417_00875 and PS417_00880 are separated by 778 nucleotides
PS417_00865: PS417_00865 - hypothetical protein, at 194,666 to 194,938
_00865
PS417_00870: PS417_00870 - hypothetical protein, at 194,935 to 195,219
_00870
PS417_00875: PS417_00875 - hypothetical protein, at 195,747 to 196,052
_00875
PS417_00880: PS417_00880 - hypothetical protein, at 196,831 to 197,124
_00880
Position (kb) 195
196
197 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 195.121 kb on + strand, within PS417_00870 at 195.121 kb on + strand, within PS417_00870 at 195.122 kb on - strand, within PS417_00870 at 195.172 kb on - strand, within PS417_00870 at 195.272 kb on - strand at 195.309 kb on + strand at 195.309 kb on + strand at 195.309 kb on + strand at 195.309 kb on + strand at 195.310 kb on - strand at 195.310 kb on - strand at 195.374 kb on + strand at 195.374 kb on + strand at 195.374 kb on + strand at 195.374 kb on + strand at 195.374 kb on + strand at 195.374 kb on + strand at 195.374 kb on + strand at 195.374 kb on + strand at 195.374 kb on + strand at 195.375 kb on - strand at 195.375 kb on - strand at 195.375 kb on - strand at 195.429 kb on + strand at 195.430 kb on - strand at 195.430 kb on - strand at 195.572 kb on + strand at 195.573 kb on - strand at 195.702 kb on - strand at 195.708 kb on - strand at 196.157 kb on + strand at 196.158 kb on - strand at 196.200 kb on + strand at 196.308 kb on - strand at 196.337 kb on + strand at 196.337 kb on + strand at 196.396 kb on + strand at 196.397 kb on - strand at 196.397 kb on - strand at 196.397 kb on - strand at 196.533 kb on + strand at 196.632 kb on + strand at 196.677 kb on + strand at 196.678 kb on - strand at 196.678 kb on - strand at 196.680 kb on + strand at 196.681 kb on - strand at 196.726 kb on + strand at 196.726 kb on + strand at 196.726 kb on + strand at 196.726 kb on + strand at 196.727 kb on - strand at 196.727 kb on - strand at 196.731 kb on - strand at 196.782 kb on - strand at 196.789 kb on + strand at 196.796 kb on + strand at 196.797 kb on - strand at 196.797 kb on - strand at 196.816 kb on - strand at 196.883 kb on + strand, within PS417_00880 at 196.883 kb on + strand, within PS417_00880 at 196.935 kb on - strand, within PS417_00880 at 196.975 kb on + strand, within PS417_00880
Per-strain Table
Position Strand Gene LocusTag Fraction P. simiae OR Antrim MOI 10 remove 195,121 + PS417_00870 0.65 +0.2 195,121 + PS417_00870 0.65 +0.1 195,122 - PS417_00870 0.66 -1.2 195,172 - PS417_00870 0.83 -0.5 195,272 - -3.2 195,309 + +0.4 195,309 + +0.1 195,309 + +0.4 195,309 + +0.5 195,310 - -0.1 195,310 - -0.4 195,374 + -0.1 195,374 + +1.5 195,374 + -2.3 195,374 + -2.0 195,374 + -0.3 195,374 + +0.8 195,374 + +1.0 195,374 + -0.9 195,374 + +0.8 195,375 - +0.2 195,375 - +1.1 195,375 - +0.4 195,429 + -0.9 195,430 - +0.1 195,430 - -1.9 195,572 + -1.3 195,573 - +1.4 195,702 - -0.7 195,708 - -0.9 196,157 + -0.0 196,158 - +0.1 196,200 + -1.6 196,308 - +0.1 196,337 + +0.3 196,337 + +1.3 196,396 + -2.7 196,397 - -2.9 196,397 - +1.7 196,397 - -1.6 196,533 + +0.0 196,632 + -0.6 196,677 + +1.0 196,678 - -0.1 196,678 - +0.6 196,680 + -1.0 196,681 - +0.0 196,726 + +0.7 196,726 + -0.7 196,726 + -1.2 196,726 + +0.0 196,727 - +0.8 196,727 - -0.8 196,731 - +1.0 196,782 - -0.1 196,789 + +2.9 196,796 + -2.6 196,797 - +0.1 196,797 - +0.4 196,816 - -0.0 196,883 + PS417_00880 0.18 -0.4 196,883 + PS417_00880 0.18 -0.9 196,935 - PS417_00880 0.35 +0.1 196,975 + PS417_00880 0.49 -0.8
Or see this region's nucleotide sequence