Experiment: P. simiae OR Antrim MOI 10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_03960 and PS417_03965 are separated by 293 nucleotides PS417_03965 and PS417_03970 are separated by 0 nucleotides PS417_03970 and PS417_03975 are separated by 11 nucleotides
PS417_03960: PS417_03960 - transcriptional regulator, at 884,239 to 885,234
_03960
PS417_03965: PS417_03965 - fructose-specific PTS system (fructose 1-phosphate forming), EI, Hpr, and EII-A components <small>(from data)</small>, at 885,528 to 888,386
_03965
PS417_03970: PS417_03970 - 1-phosphofructokinase, at 888,387 to 889,307
_03970
PS417_03975: PS417_03975 - FruA, at 889,319 to 891,028
_03975
Position (kb) 885
886
887
888
889 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 885.179 kb on + strand at 885.179 kb on + strand at 885.179 kb on + strand at 885.180 kb on - strand at 885.492 kb on + strand at 885.492 kb on + strand at 885.496 kb on + strand at 885.496 kb on + strand at 885.513 kb on - strand at 885.513 kb on - strand at 885.517 kb on - strand at 885.517 kb on - strand at 885.517 kb on - strand at 885.544 kb on + strand at 885.643 kb on - strand at 885.808 kb on - strand at 886.274 kb on - strand, within PS417_03965 at 886.274 kb on - strand, within PS417_03965 at 886.288 kb on + strand, within PS417_03965 at 886.524 kb on - strand, within PS417_03965 at 887.163 kb on + strand, within PS417_03965 at 887.342 kb on + strand, within PS417_03965 at 887.343 kb on - strand, within PS417_03965 at 888.054 kb on + strand, within PS417_03965 at 888.383 kb on - strand at 888.384 kb on + strand at 888.385 kb on - strand at 888.385 kb on - strand at 888.385 kb on - strand at 888.385 kb on - strand at 889.057 kb on - strand, within PS417_03970 at 889.305 kb on + strand at 889.306 kb on - strand at 889.306 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction P. simiae OR Antrim MOI 10 remove 885,179 + -0.9 885,179 + -0.5 885,179 + -0.8 885,180 - +2.5 885,492 + +1.6 885,492 + -1.1 885,496 + +0.3 885,496 + -0.9 885,513 - +1.5 885,513 - +0.6 885,517 - +1.1 885,517 - +0.7 885,517 - -0.4 885,544 + +0.1 885,643 - +0.8 885,808 - +0.9 886,274 - PS417_03965 0.26 +1.3 886,274 - PS417_03965 0.26 +0.3 886,288 + PS417_03965 0.27 +0.9 886,524 - PS417_03965 0.35 +1.2 887,163 + PS417_03965 0.57 +0.3 887,342 + PS417_03965 0.63 +0.5 887,343 - PS417_03965 0.63 -0.7 888,054 + PS417_03965 0.88 -0.6 888,383 - +1.3 888,384 + -2.0 888,385 - +3.2 888,385 - +0.8 888,385 - -1.0 888,385 - +1.1 889,057 - PS417_03970 0.73 +1.8 889,305 + -0.8 889,306 - +0.3 889,306 - +1.0
Or see this region's nucleotide sequence