Experiment: P. simiae OR Antrim MOI 10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_23495 and PS417_23500 are separated by 2 nucleotides PS417_23500 and PS417_23505 are separated by 23 nucleotides PS417_23505 and PS417_23510 overlap by 8 nucleotides PS417_23510 and PS417_23515 are separated by 186 nucleotides
PS417_23495: PS417_23495 - GTP cyclohydrolase, at 5,085,861 to 5,086,415
_23495
PS417_23500: PS417_23500 - D-erythro-7,8-dihydroneopterin triphosphate epimerase, at 5,086,418 to 5,086,789
_23500
PS417_23505: PS417_23505 - cell division protein DedD, at 5,086,813 to 5,087,109
_23505
PS417_23510: PS417_23510 - HopJ type III effector protein, at 5,087,102 to 5,087,440
_23510
PS417_23515: PS417_23515 - thioredoxin reductase, at 5,087,627 to 5,088,589
_23515
Position (kb) 5087
5088 Strain fitness (log2 ratio) -2
-1
0
1 at 5086.122 kb on + strand, within PS417_23495 at 5086.122 kb on + strand, within PS417_23495 at 5086.123 kb on - strand, within PS417_23495 at 5086.123 kb on - strand, within PS417_23495 at 5086.123 kb on - strand, within PS417_23495 at 5086.179 kb on + strand, within PS417_23495 at 5086.179 kb on + strand, within PS417_23495 at 5086.179 kb on + strand, within PS417_23495 at 5086.180 kb on - strand, within PS417_23495 at 5086.180 kb on - strand, within PS417_23495 at 5086.180 kb on - strand, within PS417_23495 at 5086.180 kb on - strand, within PS417_23495 at 5086.413 kb on + strand at 5086.413 kb on + strand at 5086.414 kb on - strand at 5086.414 kb on - strand at 5086.414 kb on - strand at 5086.478 kb on + strand at 5086.478 kb on + strand, within PS417_23500 at 5086.478 kb on + strand, within PS417_23500 at 5086.478 kb on + strand, within PS417_23500 at 5086.479 kb on - strand, within PS417_23500 at 5086.479 kb on - strand, within PS417_23500 at 5086.479 kb on - strand, within PS417_23500 at 5086.596 kb on - strand, within PS417_23500 at 5086.952 kb on - strand, within PS417_23505 at 5086.952 kb on - strand, within PS417_23505 at 5087.186 kb on + strand, within PS417_23510 at 5087.187 kb on - strand, within PS417_23510 at 5087.192 kb on + strand, within PS417_23510 at 5087.192 kb on + strand, within PS417_23510
Per-strain Table
Position Strand Gene LocusTag Fraction P. simiae OR Antrim MOI 10 remove 5,086,122 + PS417_23495 0.47 +1.1 5,086,122 + PS417_23495 0.47 -0.9 5,086,123 - PS417_23495 0.47 +1.6 5,086,123 - PS417_23495 0.47 -2.1 5,086,123 - PS417_23495 0.47 -0.1 5,086,179 + PS417_23495 0.57 +0.5 5,086,179 + PS417_23495 0.57 +0.9 5,086,179 + PS417_23495 0.57 -0.2 5,086,180 - PS417_23495 0.57 +1.2 5,086,180 - PS417_23495 0.57 +0.7 5,086,180 - PS417_23495 0.57 -0.7 5,086,180 - PS417_23495 0.57 +0.5 5,086,413 + -1.2 5,086,413 + -2.3 5,086,414 - -0.5 5,086,414 - -0.4 5,086,414 - +1.6 5,086,478 + +1.6 5,086,478 + PS417_23500 0.16 -0.4 5,086,478 + PS417_23500 0.16 -0.2 5,086,478 + PS417_23500 0.16 -0.3 5,086,479 - PS417_23500 0.16 -0.4 5,086,479 - PS417_23500 0.16 +0.1 5,086,479 - PS417_23500 0.16 +0.2 5,086,596 - PS417_23500 0.48 +0.1 5,086,952 - PS417_23505 0.47 +0.4 5,086,952 - PS417_23505 0.47 -1.4 5,087,186 + PS417_23510 0.25 -0.8 5,087,187 - PS417_23510 0.25 -1.2 5,087,192 + PS417_23510 0.27 -0.1 5,087,192 + PS417_23510 0.27 -0.9
Or see this region's nucleotide sequence