Strain Fitness in Pseudomonas putida KT2440 around PP_0509

Experiment: Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0507 and PP_0508 are separated by 0 nucleotidesPP_0508 and PP_0509 are separated by 130 nucleotidesPP_0509 and PP_0510 are separated by 151 nucleotides PP_0507: PP_0507 - putative ABC efflux transporter, ATP-binding protein, at 596,153 to 596,863 _0507 PP_0508: PP_0508 - conserved exported protein of unknown function, at 596,864 to 597,445 _0508 PP_0509: PP_0509 - conserved protein of unknown function, at 597,576 to 597,920 _0509 PP_0510: PP_0510 - Thioredoxin, at 598,072 to 598,944 _0510 Position (kb) 597 598Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 596.599 kb on + strand, within PP_0507at 596.599 kb on + strand, within PP_0507at 596.600 kb on - strand, within PP_0507at 596.600 kb on - strand, within PP_0507at 596.600 kb on - strand, within PP_0507at 596.600 kb on - strand, within PP_0507at 596.600 kb on - strand, within PP_0507at 596.601 kb on + strand, within PP_0507at 596.601 kb on + strand, within PP_0507at 596.601 kb on + strand, within PP_0507at 596.601 kb on + strand, within PP_0507at 596.602 kb on - strand, within PP_0507at 596.602 kb on - strand, within PP_0507at 597.024 kb on + strand, within PP_0508at 597.025 kb on - strand, within PP_0508at 597.025 kb on - strand, within PP_0508at 597.295 kb on + strand, within PP_0508at 597.327 kb on - strand, within PP_0508at 597.630 kb on - strand, within PP_0509at 597.630 kb on - strand, within PP_0509at 597.630 kb on - strand, within PP_0509at 597.630 kb on - strand, within PP_0509at 597.679 kb on + strand, within PP_0509at 597.904 kb on - strandat 597.904 kb on - strandat 598.192 kb on - strand, within PP_0510at 598.232 kb on + strand, within PP_0510at 598.233 kb on - strand, within PP_0510at 598.311 kb on + strand, within PP_0510at 598.311 kb on + strand, within PP_0510at 598.466 kb on + strand, within PP_0510at 598.466 kb on + strand, within PP_0510at 598.516 kb on + strand, within PP_0510at 598.517 kb on - strand, within PP_0510at 598.606 kb on + strand, within PP_0510at 598.606 kb on + strand, within PP_0510at 598.606 kb on + strand, within PP_0510at 598.607 kb on - strand, within PP_0510at 598.607 kb on - strand, within PP_0510at 598.607 kb on - strand, within PP_0510at 598.607 kb on - strand, within PP_0510at 598.607 kb on - strand, within PP_0510

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Per-strain Table

Position Strand Gene LocusTag Fraction Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs
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596,599 + PP_0507 0.63 -3.2
596,599 + PP_0507 0.63 -2.2
596,600 - PP_0507 0.63 -3.5
596,600 - PP_0507 0.63 +0.6
596,600 - PP_0507 0.63 -0.3
596,600 - PP_0507 0.63 +0.1
596,600 - PP_0507 0.63 -0.5
596,601 + PP_0507 0.63 -1.0
596,601 + PP_0507 0.63 -0.0
596,601 + PP_0507 0.63 -1.0
596,601 + PP_0507 0.63 +2.2
596,602 - PP_0507 0.63 +0.8
596,602 - PP_0507 0.63 +0.1
597,024 + PP_0508 0.27 +0.5
597,025 - PP_0508 0.28 +0.4
597,025 - PP_0508 0.28 -2.7
597,295 + PP_0508 0.74 -1.7
597,327 - PP_0508 0.80 +0.6
597,630 - PP_0509 0.16 +1.1
597,630 - PP_0509 0.16 +0.3
597,630 - PP_0509 0.16 +1.7
597,630 - PP_0509 0.16 +0.8
597,679 + PP_0509 0.30 +0.5
597,904 - +0.2
597,904 - -3.6
598,192 - PP_0510 0.14 +1.2
598,232 + PP_0510 0.18 +0.7
598,233 - PP_0510 0.18 +0.1
598,311 + PP_0510 0.27 -3.3
598,311 + PP_0510 0.27 +0.3
598,466 + PP_0510 0.45 +0.8
598,466 + PP_0510 0.45 -0.6
598,516 + PP_0510 0.51 -1.4
598,517 - PP_0510 0.51 -0.3
598,606 + PP_0510 0.61 -0.3
598,606 + PP_0510 0.61 +0.6
598,606 + PP_0510 0.61 +0.6
598,607 - PP_0510 0.61 -0.6
598,607 - PP_0510 0.61 -0.9
598,607 - PP_0510 0.61 +0.1
598,607 - PP_0510 0.61 +2.0
598,607 - PP_0510 0.61 +0.3

Or see this region's nucleotide sequence