Strain Fitness in Pseudomonas putida KT2440 around PP_0313

Experiment: Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0312 and PP_0313 are separated by 10 nucleotidesPP_0313 and PP_0314 are separated by 601 nucleotides PP_0312: PP_0312 - electron transfer flavoprotein, alpha subunit, at 374,711 to 375,943 _0312 PP_0313: PP_0313 - putative electron transfer flavoprotein beta subunit, at 375,954 to 376,724 _0313 PP_0314: PP_0314 - conserved protein of unknown function, at 377,326 to 378,057 _0314 Position (kb) 375 376 377Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 374.990 kb on + strand, within PP_0312at 374.990 kb on + strand, within PP_0312at 374.990 kb on + strand, within PP_0312at 374.991 kb on - strand, within PP_0312at 374.991 kb on - strand, within PP_0312at 374.991 kb on - strand, within PP_0312at 374.991 kb on - strand, within PP_0312at 375.185 kb on + strand, within PP_0312at 375.358 kb on + strand, within PP_0312at 375.615 kb on - strand, within PP_0312at 375.737 kb on + strand, within PP_0312at 375.737 kb on + strand, within PP_0312at 375.738 kb on - strand, within PP_0312at 375.738 kb on - strand, within PP_0312at 375.912 kb on - strandat 375.912 kb on - strandat 375.941 kb on + strandat 375.942 kb on - strandat 375.959 kb on + strandat 376.070 kb on + strand, within PP_0313at 376.201 kb on - strand, within PP_0313at 376.201 kb on - strand, within PP_0313at 376.736 kb on + strandat 376.736 kb on + strandat 376.842 kb on - strandat 376.861 kb on - strandat 376.937 kb on + strandat 376.937 kb on + strandat 377.075 kb on - strandat 377.205 kb on + strandat 377.267 kb on + strandat 377.267 kb on + strandat 377.267 kb on + strandat 377.291 kb on - strandat 377.312 kb on + strandat 377.312 kb on + strandat 377.313 kb on - strandat 377.313 kb on - strandat 377.398 kb on + strandat 377.407 kb on + strand, within PP_0314at 377.408 kb on - strand, within PP_0314at 377.423 kb on + strand, within PP_0314at 377.478 kb on + strand, within PP_0314at 377.478 kb on + strand, within PP_0314at 377.478 kb on + strand, within PP_0314at 377.479 kb on - strand, within PP_0314at 377.479 kb on - strand, within PP_0314at 377.479 kb on - strand, within PP_0314at 377.479 kb on - strand, within PP_0314at 377.482 kb on + strandat 377.482 kb on + strand, within PP_0314at 377.483 kb on - strand, within PP_0314at 377.510 kb on - strand, within PP_0314at 377.534 kb on + strand, within PP_0314at 377.534 kb on + strand, within PP_0314at 377.549 kb on + strand, within PP_0314at 377.581 kb on + strand, within PP_0314at 377.581 kb on + strand, within PP_0314at 377.581 kb on + strand, within PP_0314at 377.622 kb on + strand, within PP_0314at 377.684 kb on + strand, within PP_0314at 377.684 kb on + strand, within PP_0314at 377.684 kb on + strand, within PP_0314at 377.685 kb on - strand, within PP_0314at 377.685 kb on - strand, within PP_0314at 377.685 kb on - strand, within PP_0314at 377.689 kb on - strand, within PP_0314at 377.690 kb on + strand, within PP_0314at 377.690 kb on + strand, within PP_0314at 377.690 kb on + strand, within PP_0314at 377.690 kb on + strand, within PP_0314at 377.690 kb on + strand, within PP_0314at 377.691 kb on - strand, within PP_0314at 377.691 kb on - strand, within PP_0314at 377.691 kb on - strand, within PP_0314at 377.716 kb on + strand, within PP_0314at 377.716 kb on + strand, within PP_0314at 377.721 kb on + strand, within PP_0314at 377.721 kb on + strand, within PP_0314at 377.721 kb on + strand, within PP_0314at 377.722 kb on - strand, within PP_0314at 377.722 kb on - strand, within PP_0314

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Per-strain Table

Position Strand Gene LocusTag Fraction Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs
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374,990 + PP_0312 0.23 +0.6
374,990 + PP_0312 0.23 -2.1
374,990 + PP_0312 0.23 +0.5
374,991 - PP_0312 0.23 +0.7
374,991 - PP_0312 0.23 -2.0
374,991 - PP_0312 0.23 -0.7
374,991 - PP_0312 0.23 -2.3
375,185 + PP_0312 0.38 +0.5
375,358 + PP_0312 0.52 -1.3
375,615 - PP_0312 0.73 +0.8
375,737 + PP_0312 0.83 +0.2
375,737 + PP_0312 0.83 +1.0
375,738 - PP_0312 0.83 -0.4
375,738 - PP_0312 0.83 +0.0
375,912 - +0.6
375,912 - +0.2
375,941 + -0.4
375,942 - -1.4
375,959 + +0.4
376,070 + PP_0313 0.15 +0.4
376,201 - PP_0313 0.32 +0.3
376,201 - PP_0313 0.32 +1.0
376,736 + -3.8
376,736 + +2.1
376,842 - -2.6
376,861 - +1.0
376,937 + +1.3
376,937 + -0.6
377,075 - +1.2
377,205 + +1.6
377,267 + +0.5
377,267 + +0.8
377,267 + +0.5
377,291 - +0.5
377,312 + -0.6
377,312 + +0.5
377,313 - -0.1
377,313 - -0.3
377,398 + +1.3
377,407 + PP_0314 0.11 +0.1
377,408 - PP_0314 0.11 +0.4
377,423 + PP_0314 0.13 +1.5
377,478 + PP_0314 0.21 +1.0
377,478 + PP_0314 0.21 -0.5
377,478 + PP_0314 0.21 -2.9
377,479 - PP_0314 0.21 -0.3
377,479 - PP_0314 0.21 +1.0
377,479 - PP_0314 0.21 -0.3
377,479 - PP_0314 0.21 -0.2
377,482 + +0.5
377,482 + PP_0314 0.21 -0.2
377,483 - PP_0314 0.21 +1.7
377,510 - PP_0314 0.25 +0.5
377,534 + PP_0314 0.28 -0.1
377,534 + PP_0314 0.28 +0.1
377,549 + PP_0314 0.30 +0.5
377,581 + PP_0314 0.35 +0.0
377,581 + PP_0314 0.35 -3.8
377,581 + PP_0314 0.35 +0.4
377,622 + PP_0314 0.40 +0.5
377,684 + PP_0314 0.49 -0.2
377,684 + PP_0314 0.49 +1.1
377,684 + PP_0314 0.49 +0.1
377,685 - PP_0314 0.49 +0.4
377,685 - PP_0314 0.49 +1.1
377,685 - PP_0314 0.49 +0.6
377,689 - PP_0314 0.50 +0.3
377,690 + PP_0314 0.50 +0.8
377,690 + PP_0314 0.50 -1.6
377,690 + PP_0314 0.50 +0.1
377,690 + PP_0314 0.50 +0.0
377,690 + PP_0314 0.50 +0.1
377,691 - PP_0314 0.50 -0.9
377,691 - PP_0314 0.50 +0.2
377,691 - PP_0314 0.50 +0.4
377,716 + PP_0314 0.53 +0.3
377,716 + PP_0314 0.53 +0.6
377,721 + PP_0314 0.54 -2.1
377,721 + PP_0314 0.54 -0.1
377,721 + PP_0314 0.54 +0.4
377,722 - PP_0314 0.54 +0.6
377,722 - PP_0314 0.54 +1.1

Or see this region's nucleotide sequence