Experiment: P. simiae OR1 MOI 0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_04500 and PS417_04505 are separated by 36 nucleotides PS417_04505 and PS417_04510 are separated by 131 nucleotides PS417_04510 and PS417_04515 are separated by 242 nucleotides
PS417_04500: PS417_04500 - hypothetical protein, at 994,290 to 994,550
_04500
PS417_04505: PS417_04505 - hypothetical protein, at 994,587 to 995,207
_04505
PS417_04510: PS417_04510 - chemotaxis protein, at 995,339 to 997,477
_04510
PS417_04515: PS417_04515 - peptidase M48, at 997,720 to 998,538
_04515
Position (kb) 995
996
997
998 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 994.485 kb on + strand, within PS417_04500 at 994.485 kb on + strand, within PS417_04500 at 994.548 kb on + strand at 994.549 kb on - strand at 995.272 kb on + strand at 995.279 kb on + strand at 995.279 kb on + strand at 995.280 kb on - strand at 995.280 kb on - strand at 995.280 kb on - strand at 995.285 kb on + strand at 995.285 kb on + strand at 995.285 kb on + strand at 995.286 kb on - strand at 995.286 kb on - strand at 995.286 kb on - strand at 995.286 kb on - strand at 995.286 kb on - strand at 996.088 kb on + strand, within PS417_04510 at 996.089 kb on - strand, within PS417_04510 at 996.572 kb on + strand, within PS417_04510 at 996.573 kb on - strand, within PS417_04510 at 996.665 kb on - strand, within PS417_04510 at 996.666 kb on + strand, within PS417_04510 at 996.667 kb on - strand, within PS417_04510 at 996.667 kb on - strand, within PS417_04510 at 996.720 kb on + strand, within PS417_04510 at 996.861 kb on + strand, within PS417_04510 at 996.862 kb on - strand, within PS417_04510 at 996.912 kb on + strand, within PS417_04510 at 996.912 kb on + strand, within PS417_04510 at 996.912 kb on + strand, within PS417_04510 at 996.913 kb on - strand, within PS417_04510 at 996.913 kb on - strand, within PS417_04510 at 996.915 kb on + strand, within PS417_04510 at 996.915 kb on + strand, within PS417_04510 at 996.915 kb on + strand, within PS417_04510 at 997.062 kb on + strand, within PS417_04510 at 997.062 kb on + strand, within PS417_04510 at 997.063 kb on - strand, within PS417_04510 at 997.108 kb on - strand, within PS417_04510 at 997.108 kb on - strand, within PS417_04510 at 997.395 kb on + strand at 997.395 kb on + strand at 997.501 kb on + strand at 997.501 kb on + strand at 997.609 kb on + strand at 997.609 kb on + strand at 997.647 kb on + strand at 997.648 kb on - strand at 997.674 kb on + strand at 997.675 kb on - strand at 997.739 kb on + strand at 997.740 kb on - strand at 997.828 kb on + strand, within PS417_04515 at 997.828 kb on + strand, within PS417_04515 at 997.828 kb on + strand, within PS417_04515 at 997.828 kb on + strand, within PS417_04515 at 997.829 kb on - strand, within PS417_04515 at 997.829 kb on - strand, within PS417_04515 at 997.870 kb on + strand, within PS417_04515 at 997.870 kb on + strand, within PS417_04515 at 997.870 kb on + strand, within PS417_04515 at 997.870 kb on + strand, within PS417_04515 at 997.870 kb on + strand, within PS417_04515 at 997.871 kb on - strand, within PS417_04515 at 997.871 kb on - strand, within PS417_04515 at 997.871 kb on - strand, within PS417_04515 at 997.871 kb on - strand, within PS417_04515 at 997.871 kb on - strand, within PS417_04515 at 997.871 kb on - strand, within PS417_04515 at 998.090 kb on - strand, within PS417_04515 at 998.291 kb on - strand, within PS417_04515 at 998.371 kb on + strand, within PS417_04515 at 998.371 kb on + strand, within PS417_04515 at 998.371 kb on + strand, within PS417_04515 at 998.449 kb on - strand, within PS417_04515
Per-strain Table
Position Strand Gene LocusTag Fraction P. simiae OR1 MOI 0.1 remove 994,485 + PS417_04500 0.75 +1.9 994,485 + PS417_04500 0.75 -0.3 994,548 + +0.2 994,549 - +0.6 995,272 + +0.5 995,279 + +0.4 995,279 + -1.6 995,280 - +0.2 995,280 - +0.2 995,280 - +0.6 995,285 + -0.7 995,285 + +1.8 995,285 + -0.9 995,286 - +0.2 995,286 - -3.2 995,286 - -0.2 995,286 - -0.7 995,286 - -2.7 996,088 + PS417_04510 0.35 -1.6 996,089 - PS417_04510 0.35 +0.5 996,572 + PS417_04510 0.58 +2.7 996,573 - PS417_04510 0.58 -1.2 996,665 - PS417_04510 0.62 -0.4 996,666 + PS417_04510 0.62 -2.7 996,667 - PS417_04510 0.62 +0.2 996,667 - PS417_04510 0.62 -0.7 996,720 + PS417_04510 0.65 +0.0 996,861 + PS417_04510 0.71 -1.9 996,862 - PS417_04510 0.71 +1.0 996,912 + PS417_04510 0.74 +0.1 996,912 + PS417_04510 0.74 +2.3 996,912 + PS417_04510 0.74 -1.1 996,913 - PS417_04510 0.74 +0.9 996,913 - PS417_04510 0.74 -0.4 996,915 + PS417_04510 0.74 +0.8 996,915 + PS417_04510 0.74 -0.1 996,915 + PS417_04510 0.74 +1.1 997,062 + PS417_04510 0.81 -0.1 997,062 + PS417_04510 0.81 -1.2 997,063 - PS417_04510 0.81 +1.4 997,108 - PS417_04510 0.83 +0.6 997,108 - PS417_04510 0.83 +0.5 997,395 + -0.1 997,395 + +1.7 997,501 + -0.6 997,501 + -0.2 997,609 + -0.7 997,609 + -1.7 997,647 + +1.2 997,648 - -3.9 997,674 + -3.1 997,675 - +0.9 997,739 + -1.2 997,740 - +1.2 997,828 + PS417_04515 0.13 -0.3 997,828 + PS417_04515 0.13 -1.6 997,828 + PS417_04515 0.13 -0.5 997,828 + PS417_04515 0.13 +0.6 997,829 - PS417_04515 0.13 +0.6 997,829 - PS417_04515 0.13 +2.7 997,870 + PS417_04515 0.18 +1.9 997,870 + PS417_04515 0.18 +2.6 997,870 + PS417_04515 0.18 +0.6 997,870 + PS417_04515 0.18 +0.2 997,870 + PS417_04515 0.18 +0.4 997,871 - PS417_04515 0.18 +5.3 997,871 - PS417_04515 0.18 +1.9 997,871 - PS417_04515 0.18 -0.7 997,871 - PS417_04515 0.18 -0.6 997,871 - PS417_04515 0.18 +1.9 997,871 - PS417_04515 0.18 +0.8 998,090 - PS417_04515 0.45 -0.9 998,291 - PS417_04515 0.70 -0.2 998,371 + PS417_04515 0.79 +1.6 998,371 + PS417_04515 0.79 +1.9 998,371 + PS417_04515 0.79 +0.6 998,449 - PS417_04515 0.89 +4.7
Or see this region's nucleotide sequence