Experiment: P. simiae OR1 MOI 0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_04010 and PS417_04015 overlap by 4 nucleotides PS417_04015 and PS417_04020 are separated by 11 nucleotides PS417_04020 and PS417_04025 are separated by 20 nucleotides
PS417_04010: PS417_04010 - glycine/betaine ABC transporter ATP-binding protein, at 900,994 to 902,151
_04010
PS417_04015: PS417_04015 - choline ABC transporter permease, at 902,148 to 902,801
_04015
PS417_04020: PS417_04020 - glycine/betaine ABC transporter substrate-binding protein, at 902,813 to 903,709
_04020
PS417_04025: PS417_04025 - glycine/betaine ABC transporter permease, at 903,730 to 904,446
_04025
Position (kb) 902
903
904 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 902.080 kb on + strand at 902.080 kb on + strand at 902.081 kb on - strand at 902.081 kb on - strand at 902.081 kb on - strand at 902.285 kb on + strand, within PS417_04015 at 902.285 kb on + strand, within PS417_04015 at 902.285 kb on + strand, within PS417_04015 at 902.290 kb on - strand, within PS417_04015 at 902.485 kb on + strand, within PS417_04015 at 902.486 kb on - strand, within PS417_04015 at 902.486 kb on - strand, within PS417_04015 at 902.814 kb on + strand at 903.015 kb on + strand, within PS417_04020 at 903.015 kb on + strand, within PS417_04020 at 903.016 kb on - strand, within PS417_04020 at 903.075 kb on + strand, within PS417_04020 at 903.076 kb on - strand, within PS417_04020 at 903.171 kb on + strand, within PS417_04020 at 903.171 kb on + strand, within PS417_04020 at 903.171 kb on + strand, within PS417_04020 at 903.172 kb on - strand, within PS417_04020 at 903.172 kb on - strand, within PS417_04020 at 903.336 kb on + strand, within PS417_04020 at 903.336 kb on + strand, within PS417_04020 at 903.337 kb on - strand, within PS417_04020 at 903.408 kb on + strand, within PS417_04020 at 903.448 kb on - strand, within PS417_04020 at 903.574 kb on - strand, within PS417_04020 at 903.731 kb on + strand at 904.015 kb on - strand, within PS417_04025 at 904.015 kb on - strand, within PS417_04025 at 904.070 kb on + strand, within PS417_04025 at 904.070 kb on + strand, within PS417_04025 at 904.071 kb on - strand, within PS417_04025 at 904.075 kb on - strand at 904.075 kb on - strand, within PS417_04025 at 904.325 kb on + strand, within PS417_04025 at 904.326 kb on - strand, within PS417_04025 at 904.593 kb on + strand at 904.606 kb on + strand at 904.651 kb on + strand at 904.658 kb on + strand at 904.658 kb on + strand at 904.684 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction P. simiae OR1 MOI 0.1 remove 902,080 + -2.2 902,080 + -1.0 902,081 - +2.7 902,081 - +0.0 902,081 - -1.0 902,285 + PS417_04015 0.21 -0.4 902,285 + PS417_04015 0.21 +0.0 902,285 + PS417_04015 0.21 -1.2 902,290 - PS417_04015 0.22 -3.2 902,485 + PS417_04015 0.52 -1.7 902,486 - PS417_04015 0.52 -0.7 902,486 - PS417_04015 0.52 -0.3 902,814 + -1.1 903,015 + PS417_04020 0.23 -2.1 903,015 + PS417_04020 0.23 -2.0 903,016 - PS417_04020 0.23 -0.5 903,075 + PS417_04020 0.29 -3.2 903,076 - PS417_04020 0.29 -0.8 903,171 + PS417_04020 0.40 -0.7 903,171 + PS417_04020 0.40 -1.2 903,171 + PS417_04020 0.40 -2.7 903,172 - PS417_04020 0.40 +0.0 903,172 - PS417_04020 0.40 -2.1 903,336 + PS417_04020 0.58 -0.9 903,336 + PS417_04020 0.58 -1.0 903,337 - PS417_04020 0.58 -0.4 903,408 + PS417_04020 0.66 -1.2 903,448 - PS417_04020 0.71 -1.6 903,574 - PS417_04020 0.85 -2.7 903,731 + -2.8 904,015 - PS417_04025 0.40 -1.6 904,015 - PS417_04025 0.40 +0.6 904,070 + PS417_04025 0.47 -0.8 904,070 + PS417_04025 0.47 -2.1 904,071 - PS417_04025 0.48 -1.2 904,075 - +0.0 904,075 - PS417_04025 0.48 -3.0 904,325 + PS417_04025 0.83 -0.8 904,326 - PS417_04025 0.83 -2.2 904,593 + -1.2 904,606 + -2.1 904,651 + -4.1 904,658 + -0.5 904,658 + -2.3 904,684 + -1.0
Or see this region's nucleotide sequence