Experiment: P. simiae OR1 MOI 0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_03995 and PS417_04000 are separated by 2 nucleotides PS417_04000 and PS417_04005 are separated by 49 nucleotides PS417_04005 and PS417_04010 are separated by 479 nucleotides
PS417_03995: PS417_03995 - Fe(II)-dependent oxygenase, at 897,866 to 898,546
_03995
PS417_04000: PS417_04000 - hypothetical protein, at 898,549 to 899,301
_04000
PS417_04005: PS417_04005 - ornithine decarboxylase, at 899,351 to 900,514
_04005
PS417_04010: PS417_04010 - glycine/betaine ABC transporter ATP-binding protein, at 900,994 to 902,151
_04010
Position (kb) 899
900
901 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 898.374 kb on - strand, within PS417_03995 at 898.511 kb on + strand at 898.512 kb on - strand at 898.512 kb on - strand at 898.559 kb on + strand at 898.560 kb on - strand at 898.788 kb on + strand, within PS417_04000 at 898.855 kb on + strand, within PS417_04000 at 898.894 kb on + strand, within PS417_04000 at 898.894 kb on + strand, within PS417_04000 at 898.895 kb on - strand, within PS417_04000 at 898.895 kb on - strand, within PS417_04000 at 898.895 kb on - strand, within PS417_04000 at 898.895 kb on - strand, within PS417_04000 at 898.895 kb on - strand, within PS417_04000 at 898.900 kb on + strand, within PS417_04000 at 898.900 kb on + strand, within PS417_04000 at 898.900 kb on + strand, within PS417_04000 at 898.901 kb on - strand, within PS417_04000 at 898.963 kb on + strand, within PS417_04000 at 899.117 kb on - strand, within PS417_04000 at 899.270 kb on - strand at 899.270 kb on - strand at 899.300 kb on - strand at 899.320 kb on + strand at 899.321 kb on - strand at 899.358 kb on + strand at 899.359 kb on - strand at 899.359 kb on - strand at 899.404 kb on - strand at 899.415 kb on + strand at 899.436 kb on + strand at 899.482 kb on - strand, within PS417_04005 at 899.490 kb on + strand, within PS417_04005 at 899.491 kb on - strand, within PS417_04005 at 899.628 kb on + strand, within PS417_04005 at 899.628 kb on + strand, within PS417_04005 at 899.628 kb on + strand at 899.659 kb on + strand, within PS417_04005 at 899.820 kb on + strand, within PS417_04005 at 899.820 kb on + strand, within PS417_04005 at 899.820 kb on + strand, within PS417_04005 at 899.821 kb on - strand, within PS417_04005 at 899.821 kb on - strand, within PS417_04005 at 899.821 kb on - strand, within PS417_04005 at 899.821 kb on - strand, within PS417_04005 at 899.821 kb on - strand, within PS417_04005 at 900.096 kb on + strand, within PS417_04005 at 900.096 kb on + strand, within PS417_04005 at 900.096 kb on + strand, within PS417_04005 at 900.096 kb on + strand, within PS417_04005 at 900.096 kb on + strand, within PS417_04005 at 900.096 kb on + strand, within PS417_04005 at 900.097 kb on - strand, within PS417_04005 at 900.097 kb on - strand, within PS417_04005 at 900.097 kb on - strand, within PS417_04005 at 900.097 kb on - strand, within PS417_04005 at 900.097 kb on - strand, within PS417_04005 at 900.187 kb on - strand, within PS417_04005 at 900.187 kb on - strand, within PS417_04005 at 900.187 kb on - strand, within PS417_04005 at 900.229 kb on + strand, within PS417_04005 at 900.230 kb on - strand, within PS417_04005 at 900.273 kb on + strand, within PS417_04005 at 900.274 kb on - strand, within PS417_04005 at 900.354 kb on + strand, within PS417_04005 at 900.355 kb on - strand, within PS417_04005 at 900.396 kb on + strand, within PS417_04005 at 900.397 kb on - strand, within PS417_04005 at 900.492 kb on + strand at 900.527 kb on + strand at 900.540 kb on + strand at 900.543 kb on + strand at 900.593 kb on + strand at 900.722 kb on - strand at 900.739 kb on - strand at 900.795 kb on + strand at 900.795 kb on + strand at 900.795 kb on + strand at 900.796 kb on - strand at 900.796 kb on - strand at 900.799 kb on + strand at 900.800 kb on - strand at 900.800 kb on - strand at 900.800 kb on - strand at 900.815 kb on - strand at 900.815 kb on - strand at 900.924 kb on + strand at 900.925 kb on - strand at 900.925 kb on - strand at 900.925 kb on - strand at 900.992 kb on + strand at 900.993 kb on - strand at 901.027 kb on - strand at 901.148 kb on + strand, within PS417_04010 at 901.148 kb on + strand, within PS417_04010 at 901.148 kb on + strand, within PS417_04010 at 901.149 kb on - strand, within PS417_04010 at 901.262 kb on + strand, within PS417_04010 at 901.262 kb on + strand, within PS417_04010 at 901.262 kb on + strand, within PS417_04010 at 901.263 kb on - strand, within PS417_04010 at 901.301 kb on + strand, within PS417_04010 at 901.302 kb on - strand, within PS417_04010 at 901.420 kb on - strand, within PS417_04010 at 901.441 kb on - strand, within PS417_04010
Per-strain Table
Position Strand Gene LocusTag Fraction P. simiae OR1 MOI 0.1 remove 898,374 - PS417_03995 0.75 +0.0 898,511 + -2.2 898,512 - -1.6 898,512 - -0.6 898,559 + -1.4 898,560 - +0.2 898,788 + PS417_04000 0.32 -0.9 898,855 + PS417_04000 0.41 -2.5 898,894 + PS417_04000 0.46 +0.1 898,894 + PS417_04000 0.46 -0.4 898,895 - PS417_04000 0.46 -0.3 898,895 - PS417_04000 0.46 +0.1 898,895 - PS417_04000 0.46 +1.5 898,895 - PS417_04000 0.46 -0.7 898,895 - PS417_04000 0.46 +0.9 898,900 + PS417_04000 0.47 +1.3 898,900 + PS417_04000 0.47 -0.1 898,900 + PS417_04000 0.47 -0.5 898,901 - PS417_04000 0.47 -0.1 898,963 + PS417_04000 0.55 +1.0 899,117 - PS417_04000 0.75 -0.4 899,270 - -2.3 899,270 - +0.0 899,300 - -0.8 899,320 + +0.9 899,321 - +0.1 899,358 + -0.1 899,359 - +2.0 899,359 - +1.0 899,404 - -1.3 899,415 + -0.1 899,436 + +1.4 899,482 - PS417_04005 0.11 -0.7 899,490 + PS417_04005 0.12 -0.2 899,491 - PS417_04005 0.12 +1.6 899,628 + PS417_04005 0.24 -1.0 899,628 + PS417_04005 0.24 -0.8 899,628 + +0.0 899,659 + PS417_04005 0.26 -1.0 899,820 + PS417_04005 0.40 +0.2 899,820 + PS417_04005 0.40 -0.1 899,820 + PS417_04005 0.40 -0.8 899,821 - PS417_04005 0.40 -0.6 899,821 - PS417_04005 0.40 -0.0 899,821 - PS417_04005 0.40 +4.6 899,821 - PS417_04005 0.40 -1.5 899,821 - PS417_04005 0.40 -0.6 900,096 + PS417_04005 0.64 +0.6 900,096 + PS417_04005 0.64 -1.3 900,096 + PS417_04005 0.64 +0.7 900,096 + PS417_04005 0.64 -0.4 900,096 + PS417_04005 0.64 -0.0 900,096 + PS417_04005 0.64 -0.7 900,097 - PS417_04005 0.64 -1.8 900,097 - PS417_04005 0.64 +1.2 900,097 - PS417_04005 0.64 -0.7 900,097 - PS417_04005 0.64 -1.1 900,097 - PS417_04005 0.64 +1.9 900,187 - PS417_04005 0.72 +0.4 900,187 - PS417_04005 0.72 +2.0 900,187 - PS417_04005 0.72 -0.3 900,229 + PS417_04005 0.75 +0.5 900,230 - PS417_04005 0.76 -2.2 900,273 + PS417_04005 0.79 +0.7 900,274 - PS417_04005 0.79 +1.0 900,354 + PS417_04005 0.86 -0.5 900,355 - PS417_04005 0.86 -0.4 900,396 + PS417_04005 0.90 +0.2 900,397 - PS417_04005 0.90 +2.9 900,492 + -0.6 900,527 + -1.9 900,540 + -1.4 900,543 + +0.6 900,593 + +1.2 900,722 - -1.6 900,739 - -0.4 900,795 + -1.0 900,795 + +0.8 900,795 + -0.4 900,796 - -0.7 900,796 - -0.1 900,799 + -2.3 900,800 - +0.1 900,800 - -0.4 900,800 - +0.4 900,815 - -2.1 900,815 - -1.0 900,924 + +0.4 900,925 - -0.7 900,925 - -0.7 900,925 - -1.1 900,992 + -1.7 900,993 - -1.1 901,027 - +1.9 901,148 + PS417_04010 0.13 -3.1 901,148 + PS417_04010 0.13 +0.6 901,148 + PS417_04010 0.13 -3.9 901,149 - PS417_04010 0.13 -4.3 901,262 + PS417_04010 0.23 +0.2 901,262 + PS417_04010 0.23 +0.6 901,262 + PS417_04010 0.23 -1.0 901,263 - PS417_04010 0.23 +1.6 901,301 + PS417_04010 0.27 -2.5 901,302 - PS417_04010 0.27 +0.2 901,420 - PS417_04010 0.37 -2.0 901,441 - PS417_04010 0.39 -1.7
Or see this region's nucleotide sequence