Experiment: P. simiae OR1 MOI 0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_03125 and PS417_03130 are separated by 172 nucleotides PS417_03130 and PS417_03135 are separated by 301 nucleotides
PS417_03125: PS417_03125 - potassium ABC transporter ATPase, at 715,758 to 717,440
_03125
PS417_03130: PS417_03130 - hypothetical protein, at 717,613 to 719,256
_03130
PS417_03135: PS417_03135 - acyl dehydratase, at 719,558 to 720,406
_03135
Position (kb) 717
718
719
720 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 716.635 kb on + strand, within PS417_03125 at 716.648 kb on + strand, within PS417_03125 at 716.649 kb on - strand, within PS417_03125 at 716.678 kb on + strand, within PS417_03125 at 716.992 kb on + strand, within PS417_03125 at 717.002 kb on + strand, within PS417_03125 at 717.003 kb on - strand, within PS417_03125 at 717.004 kb on + strand, within PS417_03125 at 717.004 kb on + strand, within PS417_03125 at 717.005 kb on - strand, within PS417_03125 at 717.080 kb on - strand, within PS417_03125 at 717.166 kb on + strand, within PS417_03125 at 717.397 kb on + strand at 717.417 kb on + strand at 717.440 kb on + strand at 717.440 kb on + strand at 717.544 kb on - strand at 717.544 kb on - strand at 717.572 kb on - strand at 717.641 kb on - strand at 717.772 kb on + strand at 718.116 kb on + strand, within PS417_03130 at 718.117 kb on - strand, within PS417_03130 at 718.264 kb on + strand, within PS417_03130 at 718.265 kb on - strand, within PS417_03130 at 718.265 kb on - strand, within PS417_03130 at 718.456 kb on - strand, within PS417_03130 at 718.500 kb on + strand, within PS417_03130 at 718.528 kb on + strand, within PS417_03130 at 718.528 kb on + strand, within PS417_03130 at 718.529 kb on - strand, within PS417_03130 at 718.966 kb on - strand, within PS417_03130 at 718.966 kb on - strand, within PS417_03130 at 718.966 kb on - strand, within PS417_03130 at 719.038 kb on - strand, within PS417_03130 at 719.161 kb on - strand at 719.204 kb on - strand at 719.223 kb on + strand at 719.242 kb on + strand at 719.243 kb on - strand at 719.277 kb on + strand at 719.345 kb on - strand at 719.378 kb on - strand at 719.385 kb on - strand at 719.396 kb on - strand at 719.534 kb on - strand at 719.535 kb on + strand at 719.535 kb on + strand at 719.535 kb on + strand at 719.537 kb on + strand at 719.539 kb on + strand at 719.587 kb on + strand at 719.657 kb on + strand, within PS417_03135 at 719.657 kb on + strand, within PS417_03135 at 719.658 kb on - strand, within PS417_03135 at 719.987 kb on + strand, within PS417_03135 at 719.987 kb on + strand, within PS417_03135 at 719.987 kb on + strand, within PS417_03135 at 720.213 kb on + strand, within PS417_03135 at 720.214 kb on - strand, within PS417_03135 at 720.214 kb on - strand, within PS417_03135
Per-strain Table
Position Strand Gene LocusTag Fraction P. simiae OR1 MOI 0.1 remove 716,635 + PS417_03125 0.52 +0.7 716,648 + PS417_03125 0.53 +2.0 716,649 - PS417_03125 0.53 +1.6 716,678 + PS417_03125 0.55 +0.7 716,992 + PS417_03125 0.73 -1.5 717,002 + PS417_03125 0.74 -0.4 717,003 - PS417_03125 0.74 +0.3 717,004 + PS417_03125 0.74 +0.6 717,004 + PS417_03125 0.74 -2.7 717,005 - PS417_03125 0.74 -0.5 717,080 - PS417_03125 0.79 +0.1 717,166 + PS417_03125 0.84 -1.2 717,397 + +0.8 717,417 + +0.6 717,440 + -0.7 717,440 + +1.6 717,544 - -0.7 717,544 - -0.5 717,572 - +0.2 717,641 - -1.0 717,772 + -1.7 718,116 + PS417_03130 0.31 +2.6 718,117 - PS417_03130 0.31 -1.2 718,264 + PS417_03130 0.40 -2.5 718,265 - PS417_03130 0.40 -0.2 718,265 - PS417_03130 0.40 -2.0 718,456 - PS417_03130 0.51 -1.2 718,500 + PS417_03130 0.54 -1.2 718,528 + PS417_03130 0.56 -2.2 718,528 + PS417_03130 0.56 +0.0 718,529 - PS417_03130 0.56 -0.8 718,966 - PS417_03130 0.82 +2.4 718,966 - PS417_03130 0.82 +0.3 718,966 - PS417_03130 0.82 -1.0 719,038 - PS417_03130 0.87 -0.5 719,161 - -1.0 719,204 - +0.0 719,223 + -2.4 719,242 + +0.0 719,243 - -0.7 719,277 + -0.5 719,345 - -0.2 719,378 - +0.5 719,385 - +0.5 719,396 - +0.0 719,534 - -0.2 719,535 + -1.6 719,535 + +0.8 719,535 + +0.0 719,537 + -0.4 719,539 + -0.4 719,587 + -1.2 719,657 + PS417_03135 0.12 -1.2 719,657 + PS417_03135 0.12 -1.3 719,658 - PS417_03135 0.12 -0.7 719,987 + PS417_03135 0.51 -3.6 719,987 + PS417_03135 0.51 +1.8 719,987 + PS417_03135 0.51 -0.3 720,213 + PS417_03135 0.77 -1.5 720,214 - PS417_03135 0.77 +0.6 720,214 - PS417_03135 0.77 +0.6
Or see this region's nucleotide sequence