Experiment: P. simiae OR1 MOI 0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_26465 and PS417_26470 are separated by 6 nucleotides PS417_26470 and PS417_26475 are separated by 129 nucleotides PS417_26475 and PS417_26480 are separated by 88 nucleotides PS417_26480 and PS417_26485 are separated by 191 nucleotides
PS417_26465: PS417_26465 - hypothetical protein, at 5,724,157 to 5,724,552
_26465
PS417_26470: PS417_26470 - cytochrome C, at 5,724,559 to 5,725,008
_26470
PS417_26475: PS417_26475 - transglycosylase, at 5,725,138 to 5,726,322
_26475
PS417_26480: PS417_26480 - membrane protein, at 5,726,411 to 5,726,797
_26480
PS417_26485: PS417_26485 - sodium:proton antiporter, at 5,726,989 to 5,728,248
_26485
Position (kb) 5725
5726
5727 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 5724.490 kb on - strand, within PS417_26465 at 5724.641 kb on + strand, within PS417_26470 at 5724.642 kb on - strand, within PS417_26470 at 5724.983 kb on - strand at 5724.983 kb on - strand at 5725.075 kb on + strand at 5725.075 kb on + strand at 5725.078 kb on + strand at 5725.079 kb on - strand at 5725.081 kb on + strand at 5725.081 kb on + strand at 5725.082 kb on - strand at 5725.137 kb on + strand at 5725.138 kb on - strand at 5725.138 kb on - strand at 5725.138 kb on - strand at 5725.270 kb on + strand, within PS417_26475 at 5725.270 kb on + strand, within PS417_26475 at 5725.270 kb on + strand, within PS417_26475 at 5725.271 kb on - strand, within PS417_26475 at 5725.271 kb on - strand, within PS417_26475 at 5725.271 kb on - strand, within PS417_26475 at 5725.271 kb on - strand, within PS417_26475 at 5725.271 kb on - strand, within PS417_26475 at 5725.271 kb on - strand, within PS417_26475 at 5725.469 kb on + strand, within PS417_26475 at 5725.470 kb on - strand, within PS417_26475 at 5725.513 kb on + strand, within PS417_26475 at 5725.514 kb on - strand, within PS417_26475 at 5725.593 kb on + strand, within PS417_26475 at 5725.611 kb on + strand at 5725.611 kb on + strand, within PS417_26475 at 5725.611 kb on + strand, within PS417_26475 at 5725.611 kb on + strand, within PS417_26475 at 5725.611 kb on + strand, within PS417_26475 at 5725.612 kb on - strand, within PS417_26475 at 5725.612 kb on - strand, within PS417_26475 at 5725.612 kb on - strand, within PS417_26475 at 5725.616 kb on - strand, within PS417_26475 at 5725.675 kb on + strand, within PS417_26475 at 5725.908 kb on + strand, within PS417_26475 at 5725.975 kb on + strand, within PS417_26475 at 5725.975 kb on + strand, within PS417_26475 at 5725.975 kb on + strand, within PS417_26475 at 5725.976 kb on - strand, within PS417_26475 at 5725.976 kb on - strand, within PS417_26475 at 5725.976 kb on - strand, within PS417_26475 at 5725.976 kb on - strand, within PS417_26475 at 5725.976 kb on - strand, within PS417_26475 at 5725.976 kb on - strand, within PS417_26475 at 5725.976 kb on - strand, within PS417_26475 at 5726.215 kb on - strand at 5726.345 kb on + strand at 5726.346 kb on - strand at 5726.413 kb on - strand at 5726.413 kb on - strand at 5726.421 kb on - strand at 5726.497 kb on - strand, within PS417_26480 at 5726.508 kb on + strand, within PS417_26480 at 5726.508 kb on + strand, within PS417_26480 at 5726.508 kb on + strand, within PS417_26480 at 5726.508 kb on + strand, within PS417_26480 at 5726.508 kb on + strand, within PS417_26480 at 5726.509 kb on - strand, within PS417_26480 at 5726.509 kb on - strand, within PS417_26480 at 5726.527 kb on + strand, within PS417_26480 at 5726.528 kb on - strand, within PS417_26480 at 5726.751 kb on + strand, within PS417_26480 at 5726.751 kb on + strand, within PS417_26480 at 5726.751 kb on + strand, within PS417_26480 at 5726.751 kb on + strand, within PS417_26480 at 5726.752 kb on - strand, within PS417_26480 at 5726.813 kb on + strand at 5726.814 kb on - strand at 5726.820 kb on - strand at 5726.838 kb on + strand at 5726.839 kb on - strand at 5726.897 kb on + strand at 5726.898 kb on - strand at 5727.037 kb on + strand at 5727.038 kb on - strand at 5727.038 kb on - strand at 5727.245 kb on + strand, within PS417_26485 at 5727.246 kb on - strand, within PS417_26485
Per-strain Table
Position Strand Gene LocusTag Fraction P. simiae OR1 MOI 0.1 remove 5,724,490 - PS417_26465 0.84 +0.5 5,724,641 + PS417_26470 0.18 -0.2 5,724,642 - PS417_26470 0.18 -2.3 5,724,983 - +0.8 5,724,983 - +0.1 5,725,075 + +0.6 5,725,075 + -0.3 5,725,078 + +0.2 5,725,079 - -2.9 5,725,081 + +0.1 5,725,081 + +4.8 5,725,082 - +0.9 5,725,137 + -2.2 5,725,138 - +0.2 5,725,138 - +0.8 5,725,138 - +0.4 5,725,270 + PS417_26475 0.11 -0.3 5,725,270 + PS417_26475 0.11 +1.6 5,725,270 + PS417_26475 0.11 -0.1 5,725,271 - PS417_26475 0.11 +1.6 5,725,271 - PS417_26475 0.11 -1.4 5,725,271 - PS417_26475 0.11 +1.7 5,725,271 - PS417_26475 0.11 -0.3 5,725,271 - PS417_26475 0.11 +0.3 5,725,271 - PS417_26475 0.11 +0.7 5,725,469 + PS417_26475 0.28 +0.6 5,725,470 - PS417_26475 0.28 +0.3 5,725,513 + PS417_26475 0.32 +0.4 5,725,514 - PS417_26475 0.32 +1.1 5,725,593 + PS417_26475 0.38 +0.9 5,725,611 + -1.6 5,725,611 + PS417_26475 0.40 -0.6 5,725,611 + PS417_26475 0.40 -1.4 5,725,611 + PS417_26475 0.40 +2.7 5,725,611 + PS417_26475 0.40 -0.3 5,725,612 - PS417_26475 0.40 +0.9 5,725,612 - PS417_26475 0.40 +2.2 5,725,612 - PS417_26475 0.40 +0.8 5,725,616 - PS417_26475 0.40 -0.1 5,725,675 + PS417_26475 0.45 +1.2 5,725,908 + PS417_26475 0.65 +0.4 5,725,975 + PS417_26475 0.71 -0.7 5,725,975 + PS417_26475 0.71 +2.0 5,725,975 + PS417_26475 0.71 -0.6 5,725,976 - PS417_26475 0.71 -0.7 5,725,976 - PS417_26475 0.71 +1.4 5,725,976 - PS417_26475 0.71 -0.0 5,725,976 - PS417_26475 0.71 +0.2 5,725,976 - PS417_26475 0.71 +1.9 5,725,976 - PS417_26475 0.71 -0.1 5,725,976 - PS417_26475 0.71 +1.2 5,726,215 - -0.1 5,726,345 + -1.4 5,726,346 - -0.6 5,726,413 - +0.5 5,726,413 - -1.4 5,726,421 - +0.4 5,726,497 - PS417_26480 0.22 +0.7 5,726,508 + PS417_26480 0.25 -1.3 5,726,508 + PS417_26480 0.25 +0.8 5,726,508 + PS417_26480 0.25 +1.9 5,726,508 + PS417_26480 0.25 +1.1 5,726,508 + PS417_26480 0.25 +0.4 5,726,509 - PS417_26480 0.25 -1.3 5,726,509 - PS417_26480 0.25 -0.3 5,726,527 + PS417_26480 0.30 -1.6 5,726,528 - PS417_26480 0.30 -0.0 5,726,751 + PS417_26480 0.88 +0.0 5,726,751 + PS417_26480 0.88 +1.7 5,726,751 + PS417_26480 0.88 -0.6 5,726,751 + PS417_26480 0.88 +0.2 5,726,752 - PS417_26480 0.88 -1.8 5,726,813 + +1.7 5,726,814 - -1.3 5,726,820 - -1.5 5,726,838 + -0.5 5,726,839 - -0.0 5,726,897 + -0.3 5,726,898 - -1.7 5,727,037 + +1.0 5,727,038 - +0.2 5,727,038 - -1.3 5,727,245 + PS417_26485 0.20 -0.4 5,727,246 - PS417_26485 0.20 -0.2
Or see this region's nucleotide sequence