Experiment: P. simiae OR1 MOI 0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_23450 and PS417_23455 overlap by 11 nucleotides PS417_23455 and PS417_23460 are separated by 98 nucleotides PS417_23460 and PS417_23465 overlap by 20 nucleotides PS417_23465 and PS417_23470 are separated by 137 nucleotides
PS417_23450: PS417_23450 - membrane protein, at 5,079,591 to 5,080,277
_23450
PS417_23455: PS417_23455 - LrgA, at 5,080,267 to 5,080,638
_23455
PS417_23460: PS417_23460 - LysR family transcriptional regulator, at 5,080,737 to 5,081,633
_23460
PS417_23465: PS417_23465 - flavodoxin, at 5,081,614 to 5,082,069
_23465
PS417_23470: PS417_23470 - histidine kinase, at 5,082,207 to 5,082,674
_23470
Position (kb) 5080
5081
5082 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5080.109 kb on - strand, within PS417_23450 at 5080.152 kb on + strand, within PS417_23450 at 5080.153 kb on - strand, within PS417_23450 at 5080.182 kb on + strand, within PS417_23450 at 5080.182 kb on + strand, within PS417_23450 at 5080.182 kb on + strand, within PS417_23450 at 5080.183 kb on - strand, within PS417_23450 at 5080.183 kb on - strand, within PS417_23450 at 5080.183 kb on - strand, within PS417_23450 at 5080.223 kb on + strand at 5080.223 kb on + strand at 5080.223 kb on + strand at 5080.225 kb on + strand at 5080.225 kb on + strand at 5080.226 kb on - strand at 5080.226 kb on - strand at 5080.226 kb on - strand at 5080.226 kb on - strand at 5080.226 kb on - strand at 5080.226 kb on - strand at 5080.282 kb on + strand at 5080.283 kb on - strand at 5080.397 kb on + strand, within PS417_23455 at 5080.397 kb on + strand, within PS417_23455 at 5080.398 kb on - strand, within PS417_23455 at 5080.586 kb on + strand, within PS417_23455 at 5080.586 kb on + strand, within PS417_23455 at 5080.989 kb on - strand, within PS417_23460 at 5080.989 kb on - strand, within PS417_23460 at 5081.313 kb on + strand, within PS417_23460 at 5081.563 kb on - strand at 5081.773 kb on - strand, within PS417_23465 at 5081.780 kb on + strand, within PS417_23465 at 5081.781 kb on - strand, within PS417_23465 at 5081.781 kb on - strand, within PS417_23465 at 5081.781 kb on - strand, within PS417_23465 at 5081.858 kb on + strand, within PS417_23465 at 5081.858 kb on + strand at 5081.859 kb on - strand, within PS417_23465 at 5081.941 kb on + strand, within PS417_23465 at 5081.941 kb on + strand, within PS417_23465 at 5081.942 kb on - strand, within PS417_23465 at 5081.942 kb on - strand, within PS417_23465 at 5081.942 kb on - strand, within PS417_23465 at 5082.039 kb on - strand at 5082.105 kb on - strand at 5082.127 kb on - strand at 5082.212 kb on + strand at 5082.213 kb on - strand at 5082.300 kb on + strand, within PS417_23470 at 5082.300 kb on + strand, within PS417_23470 at 5082.513 kb on + strand, within PS417_23470 at 5082.513 kb on + strand, within PS417_23470 at 5082.513 kb on + strand, within PS417_23470 at 5082.514 kb on - strand, within PS417_23470 at 5082.537 kb on + strand, within PS417_23470 at 5082.537 kb on + strand, within PS417_23470 at 5082.537 kb on + strand, within PS417_23470 at 5082.537 kb on + strand, within PS417_23470
Per-strain Table
Position Strand Gene LocusTag Fraction P. simiae OR1 MOI 0.1 remove 5,080,109 - PS417_23450 0.75 -0.5 5,080,152 + PS417_23450 0.82 +0.6 5,080,153 - PS417_23450 0.82 +0.6 5,080,182 + PS417_23450 0.86 -1.2 5,080,182 + PS417_23450 0.86 -1.0 5,080,182 + PS417_23450 0.86 -1.0 5,080,183 - PS417_23450 0.86 -0.2 5,080,183 - PS417_23450 0.86 -0.5 5,080,183 - PS417_23450 0.86 +1.4 5,080,223 + -1.2 5,080,223 + +0.4 5,080,223 + +2.3 5,080,225 + -0.5 5,080,225 + -0.5 5,080,226 - -1.6 5,080,226 - +0.2 5,080,226 - +0.9 5,080,226 - -3.5 5,080,226 - -1.3 5,080,226 - +2.5 5,080,282 + -0.3 5,080,283 - +2.4 5,080,397 + PS417_23455 0.35 +2.2 5,080,397 + PS417_23455 0.35 +0.9 5,080,398 - PS417_23455 0.35 +0.3 5,080,586 + PS417_23455 0.86 -1.2 5,080,586 + PS417_23455 0.86 +1.4 5,080,989 - PS417_23460 0.28 -1.2 5,080,989 - PS417_23460 0.28 -0.1 5,081,313 + PS417_23460 0.64 -1.0 5,081,563 - +0.6 5,081,773 - PS417_23465 0.35 +0.8 5,081,780 + PS417_23465 0.36 -0.6 5,081,781 - PS417_23465 0.37 +0.0 5,081,781 - PS417_23465 0.37 -0.1 5,081,781 - PS417_23465 0.37 -0.3 5,081,858 + PS417_23465 0.54 -0.2 5,081,858 + +0.6 5,081,859 - PS417_23465 0.54 +2.0 5,081,941 + PS417_23465 0.72 -0.3 5,081,941 + PS417_23465 0.72 -1.3 5,081,942 - PS417_23465 0.72 -1.0 5,081,942 - PS417_23465 0.72 -0.2 5,081,942 - PS417_23465 0.72 +0.1 5,082,039 - +0.5 5,082,105 - -3.3 5,082,127 - +0.6 5,082,212 + -2.0 5,082,213 - +1.2 5,082,300 + PS417_23470 0.20 -0.0 5,082,300 + PS417_23470 0.20 -2.2 5,082,513 + PS417_23470 0.65 -1.4 5,082,513 + PS417_23470 0.65 +0.1 5,082,513 + PS417_23470 0.65 -2.3 5,082,514 - PS417_23470 0.66 -0.1 5,082,537 + PS417_23470 0.71 -1.7 5,082,537 + PS417_23470 0.71 +0.4 5,082,537 + PS417_23470 0.71 -0.6 5,082,537 + PS417_23470 0.71 -0.5
Or see this region's nucleotide sequence