Experiment: P. simiae OR1 MOI 0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_01960 and PS417_01965 overlap by 4 nucleotides PS417_01965 and PS417_01970 overlap by 4 nucleotides PS417_01970 and PS417_01975 are separated by 69 nucleotides
PS417_01960: PS417_01960 - pilus assembly protein, at 436,193 to 436,846
_01960
PS417_01965: PS417_01965 - fimbriae biosynthesis protein, at 436,843 to 437,397
_01965
PS417_01970: PS417_01970 - pilus assembly protein, at 437,394 to 438,353
_01970
PS417_01975: PS417_01975 - pilus assembly protein PilQ, at 438,423 to 439,748
_01975
Position (kb) 437
438
439 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 436.536 kb on - strand, within PS417_01960 at 436.536 kb on - strand, within PS417_01960 at 436.617 kb on + strand, within PS417_01960 at 436.617 kb on + strand, within PS417_01960 at 436.618 kb on - strand at 436.618 kb on - strand, within PS417_01960 at 436.862 kb on + strand at 436.862 kb on + strand at 436.863 kb on - strand at 436.903 kb on + strand, within PS417_01965 at 436.907 kb on + strand, within PS417_01965 at 436.907 kb on + strand, within PS417_01965 at 437.453 kb on - strand at 437.517 kb on + strand, within PS417_01970 at 437.517 kb on + strand, within PS417_01970 at 437.518 kb on - strand, within PS417_01970 at 437.950 kb on - strand, within PS417_01970 at 437.980 kb on + strand, within PS417_01970 at 438.181 kb on + strand, within PS417_01970 at 438.182 kb on - strand, within PS417_01970 at 438.182 kb on - strand, within PS417_01970 at 438.338 kb on - strand at 438.448 kb on + strand at 438.479 kb on + strand at 438.495 kb on + strand at 438.496 kb on - strand at 438.816 kb on + strand, within PS417_01975 at 438.816 kb on + strand, within PS417_01975 at 438.816 kb on + strand, within PS417_01975 at 439.209 kb on + strand, within PS417_01975 at 439.210 kb on - strand, within PS417_01975
Per-strain Table
Position Strand Gene LocusTag Fraction P. simiae OR1 MOI 0.1 remove 436,536 - PS417_01960 0.52 -0.1 436,536 - PS417_01960 0.52 +0.2 436,617 + PS417_01960 0.65 +0.1 436,617 + PS417_01960 0.65 -1.6 436,618 - +0.7 436,618 - PS417_01960 0.65 +0.5 436,862 + -0.1 436,862 + +0.2 436,863 - +0.4 436,903 + PS417_01965 0.11 -0.9 436,907 + PS417_01965 0.12 -2.1 436,907 + PS417_01965 0.12 -2.5 437,453 - +0.1 437,517 + PS417_01970 0.13 -0.3 437,517 + PS417_01970 0.13 -1.3 437,518 - PS417_01970 0.13 -0.6 437,950 - PS417_01970 0.58 +0.2 437,980 + PS417_01970 0.61 -1.5 438,181 + PS417_01970 0.82 -1.0 438,182 - PS417_01970 0.82 -1.3 438,182 - PS417_01970 0.82 +0.1 438,338 - -0.5 438,448 + +0.2 438,479 + -1.6 438,495 + -3.4 438,496 - -0.2 438,816 + PS417_01975 0.30 +1.6 438,816 + PS417_01975 0.30 -0.3 438,816 + PS417_01975 0.30 -0.9 439,209 + PS417_01975 0.59 +1.6 439,210 - PS417_01975 0.59 -0.3
Or see this region's nucleotide sequence