Experiment: P. simiae OR1 MOI 0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_01955 and PS417_01960 are separated by 218 nucleotides PS417_01960 and PS417_01965 overlap by 4 nucleotides PS417_01965 and PS417_01970 overlap by 4 nucleotides
PS417_01955: PS417_01955 - peptidase, at 433,512 to 435,974
_01955
PS417_01960: PS417_01960 - pilus assembly protein, at 436,193 to 436,846
_01960
PS417_01965: PS417_01965 - fimbriae biosynthesis protein, at 436,843 to 437,397
_01965
PS417_01970: PS417_01970 - pilus assembly protein, at 437,394 to 438,353
_01970
Position (kb) 436
437
438 Strain fitness (log2 ratio) -2
-1
0
1 at 435.884 kb on + strand at 436.007 kb on - strand at 436.082 kb on + strand at 436.083 kb on - strand at 436.166 kb on - strand at 436.166 kb on - strand at 436.311 kb on - strand, within PS417_01960 at 436.375 kb on - strand, within PS417_01960 at 436.536 kb on - strand, within PS417_01960 at 436.536 kb on - strand, within PS417_01960 at 436.617 kb on + strand, within PS417_01960 at 436.617 kb on + strand, within PS417_01960 at 436.618 kb on - strand at 436.618 kb on - strand, within PS417_01960 at 436.862 kb on + strand at 436.862 kb on + strand at 436.863 kb on - strand at 436.903 kb on + strand, within PS417_01965 at 436.907 kb on + strand, within PS417_01965 at 436.907 kb on + strand, within PS417_01965 at 437.453 kb on - strand at 437.517 kb on + strand, within PS417_01970 at 437.517 kb on + strand, within PS417_01970 at 437.518 kb on - strand, within PS417_01970 at 437.950 kb on - strand, within PS417_01970 at 437.980 kb on + strand, within PS417_01970 at 438.181 kb on + strand, within PS417_01970 at 438.182 kb on - strand, within PS417_01970 at 438.182 kb on - strand, within PS417_01970 at 438.338 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction P. simiae OR1 MOI 0.1 remove 435,884 + +0.5 436,007 - +1.4 436,082 + +0.2 436,083 - -0.0 436,166 - -0.5 436,166 - +0.5 436,311 - PS417_01960 0.18 -1.3 436,375 - PS417_01960 0.28 +0.4 436,536 - PS417_01960 0.52 -0.1 436,536 - PS417_01960 0.52 +0.2 436,617 + PS417_01960 0.65 +0.1 436,617 + PS417_01960 0.65 -1.6 436,618 - +0.7 436,618 - PS417_01960 0.65 +0.5 436,862 + -0.1 436,862 + +0.2 436,863 - +0.4 436,903 + PS417_01965 0.11 -0.9 436,907 + PS417_01965 0.12 -2.1 436,907 + PS417_01965 0.12 -2.5 437,453 - +0.1 437,517 + PS417_01970 0.13 -0.3 437,517 + PS417_01970 0.13 -1.3 437,518 - PS417_01970 0.13 -0.6 437,950 - PS417_01970 0.58 +0.2 437,980 + PS417_01970 0.61 -1.5 438,181 + PS417_01970 0.82 -1.0 438,182 - PS417_01970 0.82 -1.3 438,182 - PS417_01970 0.82 +0.1 438,338 - -0.5
Or see this region's nucleotide sequence