Experiment: P. simiae OR1 MOI 0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_01095 and PS417_01100 are separated by 3 nucleotides PS417_01100 and PS417_01105 overlap by 1 nucleotides PS417_01105 and PS417_01110 are separated by 175 nucleotides
PS417_01095: PS417_01095 - amino acid ABC transporter ATP-binding protein, at 240,309 to 241,055
_01095
PS417_01100: PS417_01100 - amino acid ABC transporter permease, at 241,059 to 241,724
_01100
PS417_01105: PS417_01105 - cystine transporter subunit, at 241,724 to 242,518
_01105
PS417_01110: PS417_01110 - cysteine desulfhydrase, at 242,694 to 243,686
_01110
Position (kb) 241
242 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 240.061 kb on + strand at 240.062 kb on - strand at 240.062 kb on - strand at 240.176 kb on + strand at 240.202 kb on - strand at 240.245 kb on - strand at 240.263 kb on + strand at 240.282 kb on + strand at 240.567 kb on + strand, within PS417_01095 at 240.568 kb on - strand, within PS417_01095 at 240.568 kb on - strand, within PS417_01095 at 241.138 kb on + strand, within PS417_01100 at 241.159 kb on + strand, within PS417_01100 at 241.159 kb on + strand, within PS417_01100 at 241.159 kb on + strand, within PS417_01100 at 241.160 kb on - strand, within PS417_01100 at 241.160 kb on - strand, within PS417_01100 at 241.160 kb on - strand, within PS417_01100 at 241.499 kb on - strand, within PS417_01100 at 241.501 kb on + strand, within PS417_01100 at 241.502 kb on - strand, within PS417_01100 at 241.552 kb on + strand, within PS417_01100 at 241.749 kb on + strand at 241.995 kb on + strand, within PS417_01105 at 241.996 kb on - strand, within PS417_01105 at 241.996 kb on - strand, within PS417_01105 at 241.996 kb on - strand, within PS417_01105 at 242.043 kb on + strand, within PS417_01105 at 242.043 kb on + strand, within PS417_01105 at 242.043 kb on + strand, within PS417_01105 at 242.044 kb on - strand, within PS417_01105 at 242.371 kb on - strand, within PS417_01105 at 242.512 kb on + strand at 242.513 kb on - strand at 242.539 kb on - strand at 242.615 kb on + strand at 242.617 kb on + strand at 242.617 kb on + strand at 242.618 kb on - strand at 242.710 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction P. simiae OR1 MOI 0.1 remove 240,061 + -0.2 240,062 - -0.2 240,062 - -0.7 240,176 + -2.1 240,202 - -1.2 240,245 - +0.6 240,263 + -1.8 240,282 + +2.8 240,567 + PS417_01095 0.35 -1.9 240,568 - PS417_01095 0.35 -1.3 240,568 - PS417_01095 0.35 -0.7 241,138 + PS417_01100 0.12 +2.8 241,159 + PS417_01100 0.15 +1.3 241,159 + PS417_01100 0.15 -0.6 241,159 + PS417_01100 0.15 +0.1 241,160 - PS417_01100 0.15 +0.2 241,160 - PS417_01100 0.15 -0.7 241,160 - PS417_01100 0.15 -2.4 241,499 - PS417_01100 0.66 -2.3 241,501 + PS417_01100 0.66 -2.1 241,502 - PS417_01100 0.67 +0.4 241,552 + PS417_01100 0.74 +0.7 241,749 + -0.9 241,995 + PS417_01105 0.34 -0.0 241,996 - PS417_01105 0.34 -0.8 241,996 - PS417_01105 0.34 +0.5 241,996 - PS417_01105 0.34 +1.0 242,043 + PS417_01105 0.40 -1.1 242,043 + PS417_01105 0.40 -0.0 242,043 + PS417_01105 0.40 -0.7 242,044 - PS417_01105 0.40 -1.2 242,371 - PS417_01105 0.81 -1.7 242,512 + +0.4 242,513 - -2.5 242,539 - -3.0 242,615 + -3.0 242,617 + +2.1 242,617 + +2.8 242,618 - -0.1 242,710 + -0.4
Or see this region's nucleotide sequence