Experiment: Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_4944 and PP_4945 are separated by 192 nucleotides PP_4945 and PP_4946 are separated by 106 nucleotides
PP_4944: PP_4944 - Carbamoyltransferase, at 5,625,744 to 5,627,501
_4944
PP_4945: PP_4945 - 23S rRNA m(6)A2030 methyltransferase, at 5,627,694 to 5,628,530
_4945
PP_4946: PP_4946 - sodium/L-proline transporter, at 5,628,637 to 5,630,265
_4946
Position (kb) 5627
5628
5629 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 5626.730 kb on - strand, within PP_4944 at 5626.730 kb on - strand, within PP_4944 at 5626.730 kb on - strand, within PP_4944 at 5626.928 kb on - strand, within PP_4944 at 5627.075 kb on - strand, within PP_4944 at 5627.252 kb on - strand, within PP_4944 at 5627.508 kb on - strand at 5627.574 kb on - strand at 5627.608 kb on + strand at 5627.609 kb on - strand at 5627.658 kb on + strand at 5627.695 kb on + strand at 5627.726 kb on + strand at 5627.860 kb on + strand, within PP_4945 at 5627.860 kb on + strand, within PP_4945 at 5627.860 kb on + strand, within PP_4945 at 5627.860 kb on + strand, within PP_4945 at 5627.861 kb on - strand, within PP_4945 at 5627.861 kb on - strand, within PP_4945 at 5627.861 kb on - strand, within PP_4945 at 5627.861 kb on - strand, within PP_4945 at 5627.861 kb on - strand, within PP_4945 at 5627.912 kb on - strand, within PP_4945 at 5627.912 kb on - strand, within PP_4945 at 5627.915 kb on - strand, within PP_4945 at 5628.185 kb on + strand, within PP_4945 at 5628.247 kb on + strand, within PP_4945 at 5628.248 kb on - strand, within PP_4945 at 5628.292 kb on + strand, within PP_4945 at 5628.293 kb on - strand, within PP_4945 at 5628.391 kb on + strand, within PP_4945 at 5628.391 kb on + strand, within PP_4945 at 5628.391 kb on + strand, within PP_4945 at 5628.391 kb on + strand, within PP_4945 at 5628.392 kb on - strand at 5628.392 kb on - strand, within PP_4945 at 5628.419 kb on + strand, within PP_4945 at 5628.421 kb on + strand, within PP_4945 at 5628.523 kb on + strand at 5628.523 kb on + strand at 5628.523 kb on + strand at 5628.524 kb on - strand at 5628.558 kb on - strand at 5628.558 kb on - strand at 5628.638 kb on + strand at 5628.638 kb on + strand at 5628.638 kb on + strand at 5628.639 kb on - strand at 5628.639 kb on - strand at 5628.639 kb on - strand at 5628.765 kb on - strand at 5628.914 kb on + strand, within PP_4946 at 5628.914 kb on + strand, within PP_4946 at 5629.049 kb on + strand, within PP_4946 at 5629.049 kb on + strand, within PP_4946 at 5629.049 kb on + strand, within PP_4946 at 5629.101 kb on + strand, within PP_4946 at 5629.102 kb on - strand, within PP_4946 at 5629.239 kb on - strand, within PP_4946 at 5629.239 kb on - strand, within PP_4946
Per-strain Table
Position Strand Gene LocusTag Fraction Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs remove 5,626,730 - PP_4944 0.56 -0.2 5,626,730 - PP_4944 0.56 -1.2 5,626,730 - PP_4944 0.56 -0.5 5,626,928 - PP_4944 0.67 -2.8 5,627,075 - PP_4944 0.76 +0.3 5,627,252 - PP_4944 0.86 -1.9 5,627,508 - -0.1 5,627,574 - +3.3 5,627,608 + -0.5 5,627,609 - -0.8 5,627,658 + -0.4 5,627,695 + +0.5 5,627,726 + -0.3 5,627,860 + PP_4945 0.20 -0.2 5,627,860 + PP_4945 0.20 +1.3 5,627,860 + PP_4945 0.20 +0.4 5,627,860 + PP_4945 0.20 +0.1 5,627,861 - PP_4945 0.20 +0.8 5,627,861 - PP_4945 0.20 +1.5 5,627,861 - PP_4945 0.20 +1.6 5,627,861 - PP_4945 0.20 +0.4 5,627,861 - PP_4945 0.20 +2.2 5,627,912 - PP_4945 0.26 -0.0 5,627,912 - PP_4945 0.26 +0.1 5,627,915 - PP_4945 0.26 -0.4 5,628,185 + PP_4945 0.59 +0.9 5,628,247 + PP_4945 0.66 +0.0 5,628,248 - PP_4945 0.66 -1.6 5,628,292 + PP_4945 0.71 +0.1 5,628,293 - PP_4945 0.72 +2.3 5,628,391 + PP_4945 0.83 +0.4 5,628,391 + PP_4945 0.83 -1.7 5,628,391 + PP_4945 0.83 +1.9 5,628,391 + PP_4945 0.83 +0.1 5,628,392 - +0.9 5,628,392 - PP_4945 0.83 +0.2 5,628,419 + PP_4945 0.87 -0.2 5,628,421 + PP_4945 0.87 -0.3 5,628,523 + +0.7 5,628,523 + +0.5 5,628,523 + +0.2 5,628,524 - -0.9 5,628,558 - -1.4 5,628,558 - -0.5 5,628,638 + -1.5 5,628,638 + +0.7 5,628,638 + +0.1 5,628,639 - +0.4 5,628,639 - +0.0 5,628,639 - -0.3 5,628,765 - +0.8 5,628,914 + PP_4946 0.17 -0.2 5,628,914 + PP_4946 0.17 +0.1 5,629,049 + PP_4946 0.25 -0.5 5,629,049 + PP_4946 0.25 -1.4 5,629,049 + PP_4946 0.25 +1.3 5,629,101 + PP_4946 0.28 -0.0 5,629,102 - PP_4946 0.29 -1.2 5,629,239 - PP_4946 0.37 +0.8 5,629,239 - PP_4946 0.37 -0.6
Or see this region's nucleotide sequence