Strain Fitness in Pseudomonas putida KT2440 around PP_0386

Experiment: Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0385 and PP_5445 are separated by 343 nucleotidesPP_5445 and PP_t71 are separated by 52 nucleotidesPP_t71 and PP_0386 are separated by 16 nucleotidesPP_0386 and PP_0387 are separated by 127 nucleotides PP_0385: PP_0385 - putative serine acetyltransferase, at 465,999 to 466,553 _0385 PP_5445: PP_5445 - conserved protein of unknown function, at 466,897 to 467,067 _5445 PP_t71: PP_t71 - tRNA-Met, at 467,120 to 467,196 _t71 PP_0386: PP_0386 - Sensory box protein, at 467,213 to 470,956 _0386 PP_0387: PP_0387 - RNA polymerase, sigma 70 (sigma D) factor, at 471,084 to 472,934 _0387 Position (kb) 467 468 469 470 471Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 466.218 kb on + strand, within PP_0385at 466.299 kb on + strand, within PP_0385at 466.300 kb on - strand, within PP_0385at 466.374 kb on + strand, within PP_0385at 466.375 kb on - strand, within PP_0385at 466.456 kb on + strand, within PP_0385at 466.457 kb on - strand, within PP_0385at 466.512 kb on + strandat 466.564 kb on + strandat 466.565 kb on - strandat 466.565 kb on - strandat 466.616 kb on + strandat 466.616 kb on + strandat 466.688 kb on - strandat 466.728 kb on - strandat 466.756 kb on + strandat 466.865 kb on + strandat 466.865 kb on + strandat 466.903 kb on + strandat 466.904 kb on - strandat 466.904 kb on - strandat 466.922 kb on + strand, within PP_5445at 466.923 kb on - strand, within PP_5445at 467.006 kb on - strand, within PP_5445at 467.051 kb on + strandat 467.051 kb on + strandat 467.052 kb on - strandat 467.070 kb on - strandat 467.202 kb on - strandat 467.202 kb on - strandat 467.215 kb on - strandat 467.215 kb on - strandat 467.217 kb on - strandat 467.262 kb on - strandat 467.262 kb on - strandat 467.262 kb on - strandat 467.317 kb on - strandat 467.317 kb on - strandat 467.317 kb on - strandat 467.520 kb on + strandat 467.521 kb on - strandat 467.521 kb on - strandat 467.567 kb on + strandat 467.589 kb on + strand, within PP_0386at 467.589 kb on + strand, within PP_0386at 467.590 kb on - strand, within PP_0386at 467.766 kb on + strand, within PP_0386at 467.766 kb on + strand, within PP_0386at 467.767 kb on - strand, within PP_0386at 467.810 kb on + strand, within PP_0386at 468.093 kb on + strand, within PP_0386at 468.094 kb on - strand, within PP_0386at 468.094 kb on - strand, within PP_0386at 468.228 kb on - strand, within PP_0386at 468.311 kb on + strand, within PP_0386at 468.311 kb on + strand, within PP_0386at 468.312 kb on - strand, within PP_0386at 468.329 kb on + strand, within PP_0386at 468.473 kb on + strand, within PP_0386at 468.474 kb on - strand, within PP_0386at 468.474 kb on - strand, within PP_0386at 468.543 kb on + strand, within PP_0386at 468.543 kb on + strand, within PP_0386at 468.543 kb on + strand, within PP_0386at 468.638 kb on + strand, within PP_0386at 468.639 kb on - strand, within PP_0386at 468.684 kb on + strand, within PP_0386at 468.739 kb on - strand, within PP_0386at 468.739 kb on - strand, within PP_0386at 469.079 kb on + strand, within PP_0386at 469.079 kb on + strand, within PP_0386at 469.079 kb on + strand, within PP_0386at 469.079 kb on + strand, within PP_0386at 469.080 kb on - strand, within PP_0386at 469.080 kb on - strand, within PP_0386at 469.124 kb on - strand, within PP_0386at 469.329 kb on - strand, within PP_0386at 469.337 kb on + strand, within PP_0386at 469.439 kb on - strand, within PP_0386at 469.484 kb on + strand, within PP_0386at 469.631 kb on + strand, within PP_0386at 469.632 kb on - strand, within PP_0386at 469.751 kb on - strand, within PP_0386at 469.918 kb on - strand, within PP_0386at 469.950 kb on + strand, within PP_0386at 469.950 kb on + strand, within PP_0386at 469.950 kb on + strand, within PP_0386at 469.950 kb on + strand, within PP_0386at 469.950 kb on + strand, within PP_0386at 469.956 kb on + strand, within PP_0386at 469.957 kb on - strand, within PP_0386at 469.957 kb on - strand, within PP_0386at 469.957 kb on - strand, within PP_0386at 469.957 kb on - strand, within PP_0386at 470.020 kb on - strand, within PP_0386at 470.025 kb on + strand, within PP_0386at 470.026 kb on - strand, within PP_0386at 470.148 kb on + strand, within PP_0386at 470.149 kb on - strand, within PP_0386at 470.149 kb on - strand, within PP_0386at 470.313 kb on + strand, within PP_0386at 470.313 kb on + strand, within PP_0386at 470.334 kb on + strand, within PP_0386at 470.334 kb on + strand, within PP_0386at 470.334 kb on + strand, within PP_0386at 470.371 kb on + strand, within PP_0386at 470.371 kb on + strand, within PP_0386at 470.502 kb on + strand, within PP_0386at 470.503 kb on - strand, within PP_0386at 470.503 kb on - strand, within PP_0386at 470.533 kb on - strand, within PP_0386at 470.533 kb on - strand, within PP_0386at 470.601 kb on + strandat 470.763 kb on + strandat 470.764 kb on - strandat 470.764 kb on - strandat 470.832 kb on - strandat 470.992 kb on + strandat 471.033 kb on + strandat 471.033 kb on + strandat 471.034 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs
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466,218 + PP_0385 0.39 -1.4
466,299 + PP_0385 0.54 +0.1
466,300 - PP_0385 0.54 +1.6
466,374 + PP_0385 0.68 -0.6
466,375 - PP_0385 0.68 -0.1
466,456 + PP_0385 0.82 -0.1
466,457 - PP_0385 0.83 +0.5
466,512 + -2.0
466,564 + -1.3
466,565 - +1.0
466,565 - +0.3
466,616 + -1.3
466,616 + +0.4
466,688 - -1.0
466,728 - -0.6
466,756 + -0.5
466,865 + +0.8
466,865 + +0.0
466,903 + -0.2
466,904 - -1.0
466,904 - -0.0
466,922 + PP_5445 0.15 -0.1
466,923 - PP_5445 0.15 +0.1
467,006 - PP_5445 0.64 -0.1
467,051 + -1.7
467,051 + +0.2
467,052 - +1.3
467,070 - -1.0
467,202 - +1.9
467,202 - +0.0
467,215 - -2.5
467,215 - -1.6
467,217 - +0.5
467,262 - -0.3
467,262 - -0.3
467,262 - -0.0
467,317 - -0.4
467,317 - +0.3
467,317 - -1.8
467,520 + -0.2
467,521 - -1.4
467,521 - -2.1
467,567 + -3.4
467,589 + PP_0386 0.10 +0.4
467,589 + PP_0386 0.10 -0.3
467,590 - PP_0386 0.10 -0.5
467,766 + PP_0386 0.15 -0.2
467,766 + PP_0386 0.15 -1.6
467,767 - PP_0386 0.15 -3.0
467,810 + PP_0386 0.16 -3.2
468,093 + PP_0386 0.24 -1.4
468,094 - PP_0386 0.24 -1.8
468,094 - PP_0386 0.24 -1.0
468,228 - PP_0386 0.27 -0.9
468,311 + PP_0386 0.29 -1.5
468,311 + PP_0386 0.29 -0.6
468,312 - PP_0386 0.29 -0.1
468,329 + PP_0386 0.30 +0.2
468,473 + PP_0386 0.34 -2.9
468,474 - PP_0386 0.34 -2.8
468,474 - PP_0386 0.34 +0.2
468,543 + PP_0386 0.36 -1.6
468,543 + PP_0386 0.36 -0.8
468,543 + PP_0386 0.36 -1.2
468,638 + PP_0386 0.38 -2.5
468,639 - PP_0386 0.38 -0.9
468,684 + PP_0386 0.39 -0.1
468,739 - PP_0386 0.41 -1.7
468,739 - PP_0386 0.41 -1.4
469,079 + PP_0386 0.50 -1.6
469,079 + PP_0386 0.50 -0.6
469,079 + PP_0386 0.50 +0.1
469,079 + PP_0386 0.50 -2.0
469,080 - PP_0386 0.50 -0.5
469,080 - PP_0386 0.50 -0.1
469,124 - PP_0386 0.51 -0.0
469,329 - PP_0386 0.57 -3.3
469,337 + PP_0386 0.57 -0.8
469,439 - PP_0386 0.59 -0.2
469,484 + PP_0386 0.61 -1.6
469,631 + PP_0386 0.65 -0.8
469,632 - PP_0386 0.65 +0.2
469,751 - PP_0386 0.68 -0.3
469,918 - PP_0386 0.72 -1.6
469,950 + PP_0386 0.73 -0.7
469,950 + PP_0386 0.73 -0.7
469,950 + PP_0386 0.73 -0.4
469,950 + PP_0386 0.73 -2.0
469,950 + PP_0386 0.73 +0.0
469,956 + PP_0386 0.73 +0.0
469,957 - PP_0386 0.73 -0.5
469,957 - PP_0386 0.73 -0.5
469,957 - PP_0386 0.73 -1.0
469,957 - PP_0386 0.73 -0.7
470,020 - PP_0386 0.75 -0.8
470,025 + PP_0386 0.75 -0.9
470,026 - PP_0386 0.75 -1.3
470,148 + PP_0386 0.78 -1.3
470,149 - PP_0386 0.78 +0.3
470,149 - PP_0386 0.78 +1.1
470,313 + PP_0386 0.83 -1.6
470,313 + PP_0386 0.83 -1.9
470,334 + PP_0386 0.83 -1.0
470,334 + PP_0386 0.83 -1.5
470,334 + PP_0386 0.83 -0.9
470,371 + PP_0386 0.84 +0.3
470,371 + PP_0386 0.84 -0.8
470,502 + PP_0386 0.88 -0.3
470,503 - PP_0386 0.88 -1.0
470,503 - PP_0386 0.88 -2.8
470,533 - PP_0386 0.89 -0.6
470,533 - PP_0386 0.89 -0.9
470,601 + -2.4
470,763 + -0.0
470,764 - +0.8
470,764 - -1.5
470,832 - -1.0
470,992 + +0.1
471,033 + -2.0
471,033 + -0.5
471,034 - +0.0

Or see this region's nucleotide sequence