Experiment: Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0303 and PP_0304 are separated by 123 nucleotides PP_0304 and PP_0305 are separated by 132 nucleotides
PP_0303: PP_0303 - dehydrocarnitine cleavage enzyme, at 363,649 to 364,533
_0303
PP_0304: PP_0304 - Carnitine uptake ABC transporter, periplasmic component, at 364,657 to 365,601
_0304
PP_0305: PP_0305 - HTH-type transcriptional regulator CdhR, at 365,734 to 366,693
_0305
Position (kb) 364
365
366 Strain fitness (log2 ratio) -2
-1
0
1 at 363.780 kb on - strand, within PP_0303 at 363.780 kb on - strand, within PP_0303 at 363.780 kb on - strand, within PP_0303 at 364.109 kb on + strand, within PP_0303 at 364.109 kb on + strand, within PP_0303 at 364.110 kb on - strand, within PP_0303 at 364.110 kb on - strand, within PP_0303 at 364.426 kb on + strand, within PP_0303 at 364.668 kb on + strand at 364.881 kb on - strand, within PP_0304 at 364.881 kb on - strand, within PP_0304 at 365.159 kb on + strand, within PP_0304 at 365.160 kb on - strand, within PP_0304 at 365.160 kb on - strand, within PP_0304 at 365.225 kb on + strand, within PP_0304 at 365.226 kb on - strand, within PP_0304 at 365.231 kb on + strand, within PP_0304 at 365.317 kb on - strand, within PP_0304 at 365.317 kb on - strand, within PP_0304 at 365.447 kb on - strand, within PP_0304 at 365.447 kb on - strand, within PP_0304 at 365.625 kb on + strand at 365.625 kb on + strand at 365.626 kb on - strand at 365.626 kb on - strand at 365.626 kb on - strand at 365.626 kb on - strand at 365.626 kb on - strand at 365.626 kb on - strand at 365.631 kb on + strand at 365.632 kb on - strand at 365.662 kb on + strand at 365.662 kb on + strand at 365.663 kb on - strand at 365.663 kb on - strand at 365.711 kb on + strand at 365.711 kb on + strand at 365.851 kb on + strand, within PP_0305 at 365.851 kb on + strand, within PP_0305 at 365.868 kb on + strand, within PP_0305 at 365.869 kb on - strand, within PP_0305 at 366.151 kb on + strand, within PP_0305 at 366.521 kb on - strand, within PP_0305
Per-strain Table
Position Strand Gene LocusTag Fraction Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs remove 363,780 - PP_0303 0.15 -0.4 363,780 - PP_0303 0.15 +1.3 363,780 - PP_0303 0.15 -0.2 364,109 + PP_0303 0.52 -0.7 364,109 + PP_0303 0.52 +1.3 364,110 - PP_0303 0.52 +0.3 364,110 - PP_0303 0.52 +0.2 364,426 + PP_0303 0.88 +0.4 364,668 + -0.2 364,881 - PP_0304 0.24 +0.5 364,881 - PP_0304 0.24 +0.3 365,159 + PP_0304 0.53 -2.6 365,160 - PP_0304 0.53 +0.3 365,160 - PP_0304 0.53 +0.8 365,225 + PP_0304 0.60 +0.5 365,226 - PP_0304 0.60 +0.5 365,231 + PP_0304 0.61 +1.0 365,317 - PP_0304 0.70 +0.9 365,317 - PP_0304 0.70 +0.0 365,447 - PP_0304 0.84 +0.0 365,447 - PP_0304 0.84 +0.8 365,625 + -0.4 365,625 + +0.8 365,626 - +0.8 365,626 - +0.8 365,626 - +1.7 365,626 - -0.1 365,626 - -1.0 365,626 - -1.6 365,631 + +0.3 365,632 - -1.0 365,662 + -0.6 365,662 + +0.7 365,663 - +0.7 365,663 - +0.2 365,711 + +0.2 365,711 + -1.9 365,851 + PP_0305 0.12 -0.7 365,851 + PP_0305 0.12 -1.4 365,868 + PP_0305 0.14 -0.5 365,869 - PP_0305 0.14 +0.9 366,151 + PP_0305 0.43 -0.4 366,521 - PP_0305 0.82 +0.3
Or see this region's nucleotide sequence