Strain Fitness in Pseudomonas putida KT2440 around PP_5388

Experiment: Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs
6,142,431	+		PP_5387	0.69	-0.8
6,142,431	+		PP_5387	0.69	-0.1
6,142,431	+		PP_5387	0.69	-0.8
6,142,470	+		PP_5387	0.70	+0.8
6,142,652	+		PP_5387	0.76	+0.3
6,142,737	+		PP_5387	0.78	-0.7
6,142,737	+		PP_5387	0.78	+0.2
6,142,737	+		PP_5387	0.78	-0.1
6,142,738	-		PP_5387	0.78	+0.0
6,142,738	-		PP_5387	0.78	+0.4
6,142,772	-		PP_5387	0.79	-0.4
6,142,813	+		PP_5387	0.81	-1.2
6,142,813	+		PP_5387	0.81	-0.8
6,142,814	-		PP_5387	0.81	+0.1
6,142,836	+		PP_5387	0.81	+0.8
6,142,836	+		PP_5387	0.81	-0.6
6,142,836	+		PP_5387	0.81	+0.1
6,142,836	+		PP_5387	0.81	-0.8
6,142,836	+		PP_5387	0.81	-0.7
6,142,926	+		PP_5387	0.84	+1.0
6,142,926	+		PP_5387	0.84	-1.0
6,142,926	+		PP_5387	0.84	-0.7
6,142,927	-		PP_5387	0.84	+0.7
6,142,927	-		PP_5387	0.84	+0.0
6,143,010	+		PP_5387	0.87	-1.6
6,143,010	+		PP_5387	0.87	-1.0
6,143,010	+		PP_5387	0.87	-0.3
6,143,011	-		PP_5387	0.87	+0.9
6,143,011	-		PP_5387	0.87	+2.0
6,143,103	+		PP_5387	0.90	+1.5
6,143,104	-		PP_5387	0.90	+0.3
6,143,104	-		PP_5387	0.90	+0.2
6,143,104	-		PP_5387	0.90	+0.3
6,143,104	-		PP_5387	0.90	+0.3
6,143,225	+				+0.8
6,143,226	-				-0.1
6,143,242	+				-0.2
6,143,242	+				-0.6
6,143,359	-				+1.2
6,143,359	-				+0.2
6,143,359	-				-1.0
6,143,386	+				-0.2
6,143,386	+				-1.0
6,143,387	-				+0.1
6,143,387	-				+0.5
6,143,387	-				+0.3
6,143,387	-				+0.7
6,143,387	-				+0.0
6,143,389	+				-1.2
6,143,389	+				+0.7
6,143,389	+				+0.3
6,143,390	-				+0.3
6,143,396	+				+0.3
6,143,397	-				+0.5
6,143,432	+				+0.2
6,143,432	+				-1.1
6,143,433	-				+0.6
6,143,433	-				+0.1
6,143,518	+		PP_5388	0.29	+1.3
6,143,518	+		PP_5388	0.29	+0.1
6,143,519	-		PP_5388	0.29	+1.3
6,143,701	-		PP_5388	0.82	-0.1
6,143,701	-		PP_5388	0.82	+0.5
6,143,701	-		PP_5388	0.82	+1.5
6,143,701	-		PP_5388	0.82	-0.9
6,143,701	-		PP_5388	0.82	+0.7
6,143,701	-		PP_5388	0.82	+0.2
6,143,759	+				+0.5
6,143,759	+				-1.3
6,143,760	-				-0.8
6,143,760	-				+0.3
6,143,768	+				+0.4
6,143,772	+				-0.2
6,143,772	+				+0.0
6,143,772	+				+0.2
6,143,772	+				+0.5
6,143,772	+				-1.4
6,143,773	-				+0.6
6,143,773	-				-1.1
6,143,821	-				-1.2
6,143,821	-				-0.8
6,143,847	+				-0.1
6,143,847	+				-0.2
6,143,847	+				-0.2
6,143,848	-				+0.7
6,143,848	-				-0.2
6,143,848	-				-0.1
6,143,848	-				-0.0
6,143,876	-				+0.7
6,143,905	+				-0.4
6,143,906	-				+1.3
6,143,943	-				-0.1
6,144,007	-				-2.1
6,144,007	-				+0.5
6,144,024	-		PP_5734	0.10	+0.1
6,144,072	+		PP_5734	0.20	-0.3
6,144,072	+		PP_5734	0.20	+0.2
6,144,073	-		PP_5734	0.20	-0.2
6,144,073	-		PP_5734	0.20	-1.7
6,144,130	+		PP_5734	0.32	+0.2
6,144,131	-		PP_5734	0.32	-0.3
6,144,131	-		PP_5734	0.32	+0.6
6,144,136	+		PP_5734	0.33	+0.4
6,144,150	+		PP_5734	0.36	+1.8
6,144,186	-		PP_5734	0.43	-0.8
6,144,186	-		PP_5734	0.43	+1.0
6,144,232	+		PP_5734	0.53	-0.1
6,144,232	+		PP_5734	0.53	+0.8
6,144,232	+		PP_5734	0.53	-0.0
6,144,247	+		PP_5734	0.56	+0.6
6,144,259	-		PP_5734	0.58	+0.1
6,144,285	+		PP_5734	0.63	-1.1
6,144,285	+		PP_5734	0.63	+0.2
6,144,285	+		PP_5734	0.63	+0.7
6,144,286	-		PP_5734	0.64	+0.3
6,144,286	-		PP_5734	0.64	+0.1
6,144,286	-		PP_5734	0.64	+0.7
6,144,318	+		PP_5734	0.70	+0.8
6,144,318	+		PP_5734	0.70	+0.8
6,144,318	+		PP_5734	0.70	-0.0
6,144,318	+		PP_5734	0.70	+1.0
6,144,318	+		PP_5734	0.70	-0.5
6,144,318	+		PP_5734	0.70	-0.3
6,144,319	-		PP_5734	0.70	+0.5
6,144,319	-		PP_5734	0.70	-0.1
6,144,319	-		PP_5734	0.70	-0.2
6,144,341	+		PP_5734	0.75	-0.7
6,144,341	+		PP_5734	0.75	-0.4
6,144,342	-		PP_5734	0.75	+0.5
6,144,342	-		PP_5734	0.75	-0.3
6,144,379	+		PP_5734	0.83	+0.3
6,144,382	+		PP_5734	0.83	-1.3
6,144,382	+		PP_5734	0.83	-0.5
6,144,382	+		PP_5734	0.83	+0.6
6,144,383	-		PP_5734	0.83	-0.7
6,144,383	-		PP_5734	0.83	-0.2
6,144,387	+		PP_5734	0.84	-1.2
6,144,387	+		PP_5734	0.84	-1.5
6,144,388	-		PP_5734	0.84	-1.0
6,144,401	+		PP_5734	0.87	+0.6
6,144,459	+				+1.3
6,144,459	+				-0.2
6,144,459	+				+0.8
6,144,491	+				+0.3
6,144,491	+				+0.5
6,144,492	-				+0.2
6,144,517	+				-0.5
6,144,551	+				+0.4
6,144,551	+				+0.3
6,144,551	+				-0.5
6,144,551	+				+0.3
6,144,551	+				-1.2
6,144,555	+				-0.5
6,144,555	+				-0.5
6,144,555	+				+0.3
6,144,555	+				-0.2
6,144,555	+				-0.1
6,144,555	+				-1.0
6,144,556	-				-0.7
6,144,556	-				+0.2
6,144,556	-				-0.2
6,144,556	-				+0.4
6,144,713	+		PP_5735	0.78	-0.6
6,144,714	-		PP_5735	0.79	-0.3
6,144,718	+		PP_5735	0.81	-0.1
6,144,718	+		PP_5735	0.81	+0.4
6,144,718	+		PP_5735	0.81	-0.4
6,144,719	-		PP_5735	0.81	-0.3
6,144,760	+				-0.1
6,144,760	+				-1.3
6,144,760	+				+1.6
6,144,760	+				+1.1
6,144,761	-				-0.1
6,144,761	-				+0.0
6,144,761	-				-0.4