Experiment: Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0151 and PP_0152 are separated by 89 nucleotides PP_0152 and PP_0153 are separated by 245 nucleotides PP_0153 and PP_0154 are separated by 373 nucleotides
PP_0151: PP_0151 - conserved exported protein of unknown function, at 160,742 to 161,035
_0151
PP_0152: PP_0152 - conserved exported protein of unknown function, at 161,125 to 161,505
_0152
PP_0153: PP_0153 - hypothetical protein, at 161,751 to 161,966
_0153
PP_0154: PP_0154 - Succinyl-CoA:acetate CoA-transferase (EC 2.8.3.18) <small>(from data)</small>, at 162,340 to 163,833
_0154
Position (kb) 161
162 Strain fitness (log2 ratio) -2
-1
0
1
2 at 160.808 kb on + strand, within PP_0151 at 160.809 kb on - strand, within PP_0151 at 160.894 kb on + strand, within PP_0151 at 160.894 kb on + strand, within PP_0151 at 160.894 kb on + strand, within PP_0151 at 160.941 kb on + strand, within PP_0151 at 160.942 kb on - strand, within PP_0151 at 161.029 kb on - strand at 161.351 kb on - strand, within PP_0152 at 161.433 kb on + strand, within PP_0152 at 161.434 kb on - strand, within PP_0152 at 161.481 kb on - strand at 161.529 kb on + strand at 161.568 kb on + strand at 161.858 kb on + strand, within PP_0153 at 161.858 kb on + strand, within PP_0153 at 161.859 kb on - strand, within PP_0153 at 161.957 kb on + strand at 161.958 kb on - strand at 161.958 kb on - strand at 161.997 kb on + strand at 161.998 kb on - strand at 162.001 kb on + strand at 162.001 kb on + strand at 162.002 kb on - strand at 162.049 kb on - strand at 162.052 kb on + strand at 162.053 kb on - strand at 162.082 kb on + strand at 162.207 kb on - strand at 162.241 kb on - strand at 162.246 kb on + strand at 162.246 kb on + strand at 162.246 kb on + strand at 162.247 kb on - strand at 162.264 kb on - strand at 162.447 kb on - strand at 162.468 kb on - strand at 162.747 kb on - strand, within PP_0154 at 162.751 kb on - strand, within PP_0154 at 162.751 kb on - strand, within PP_0154 at 162.751 kb on - strand, within PP_0154 at 162.774 kb on + strand, within PP_0154 at 162.796 kb on + strand, within PP_0154 at 162.797 kb on - strand, within PP_0154 at 162.797 kb on - strand, within PP_0154 at 162.851 kb on + strand, within PP_0154 at 162.852 kb on - strand, within PP_0154 at 162.852 kb on - strand, within PP_0154 at 162.852 kb on - strand, within PP_0154 at 162.924 kb on + strand, within PP_0154 at 162.925 kb on - strand, within PP_0154 at 162.925 kb on - strand, within PP_0154 at 162.925 kb on - strand, within PP_0154 at 162.925 kb on - strand, within PP_0154 at 162.925 kb on - strand, within PP_0154 at 162.925 kb on - strand, within PP_0154 at 162.925 kb on - strand, within PP_0154
Per-strain Table
Position Strand Gene LocusTag Fraction Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs remove 160,808 + PP_0151 0.22 +0.6 160,809 - PP_0151 0.23 +0.2 160,894 + PP_0151 0.52 +0.6 160,894 + PP_0151 0.52 -0.1 160,894 + PP_0151 0.52 +1.0 160,941 + PP_0151 0.68 -0.2 160,942 - PP_0151 0.68 +0.1 161,029 - -0.5 161,351 - PP_0152 0.59 +0.3 161,433 + PP_0152 0.81 +1.0 161,434 - PP_0152 0.81 -0.0 161,481 - -1.8 161,529 + -1.4 161,568 + +0.0 161,858 + PP_0153 0.50 +1.4 161,858 + PP_0153 0.50 -0.0 161,859 - PP_0153 0.50 +0.1 161,957 + -0.5 161,958 - +0.9 161,958 - +0.3 161,997 + +0.3 161,998 - -0.3 162,001 + -0.8 162,001 + -1.1 162,002 - -0.7 162,049 - -0.3 162,052 + +1.0 162,053 - +0.5 162,082 + +0.6 162,207 - -1.4 162,241 - -0.4 162,246 + +0.1 162,246 + -0.5 162,246 + +0.0 162,247 - +0.2 162,264 - +2.2 162,447 - -0.6 162,468 - -0.2 162,747 - PP_0154 0.27 -0.4 162,751 - PP_0154 0.28 -0.2 162,751 - PP_0154 0.28 +0.4 162,751 - PP_0154 0.28 +0.2 162,774 + PP_0154 0.29 +0.1 162,796 + PP_0154 0.31 -0.8 162,797 - PP_0154 0.31 -1.0 162,797 - PP_0154 0.31 +0.2 162,851 + PP_0154 0.34 +0.7 162,852 - PP_0154 0.34 +0.9 162,852 - PP_0154 0.34 -1.7 162,852 - PP_0154 0.34 -1.5 162,924 + PP_0154 0.39 -0.2 162,925 - PP_0154 0.39 -0.5 162,925 - PP_0154 0.39 -0.7 162,925 - PP_0154 0.39 -0.2 162,925 - PP_0154 0.39 +1.2 162,925 - PP_0154 0.39 -0.0 162,925 - PP_0154 0.39 -0.1 162,925 - PP_0154 0.39 +0.3
Or see this region's nucleotide sequence