Strain Fitness in Pseudomonas putida KT2440 around PP_1777

Experiment: Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs
1,984,392	+		PP_1776	0.40	+0.4
1,984,393	-		PP_1776	0.40	+0.3
1,984,455	+		PP_1776	0.45	-2.2
1,984,455	+		PP_1776	0.45	+0.1
1,984,455	+		PP_1776	0.45	+0.5
1,984,456	-				+0.3
1,984,456	-		PP_1776	0.45	-2.2
1,984,526	+		PP_1776	0.50	-0.1
1,984,526	+		PP_1776	0.50	-1.6
1,984,526	+		PP_1776	0.50	-2.6
1,984,526	+		PP_1776	0.50	-0.0
1,984,526	+		PP_1776	0.50	-0.9
1,984,526	+		PP_1776	0.50	+0.4
1,984,526	+		PP_1776	0.50	-2.9
1,984,527	-		PP_1776	0.50	-0.3
1,984,527	-		PP_1776	0.50	-2.6
1,984,725	+		PP_1776	0.63	-1.2
1,984,726	-		PP_1776	0.63	+0.1
1,984,743	+		PP_1776	0.65	-1.5
1,984,743	+		PP_1776	0.65	-0.1
1,984,743	+		PP_1776	0.65	-0.7
1,984,743	+		PP_1776	0.65	-0.1
1,984,743	+		PP_1776	0.65	-1.6
1,984,743	+		PP_1776	0.65	-0.5
1,984,744	-		PP_1776	0.65	-1.5
1,984,744	-		PP_1776	0.65	-2.1
1,984,744	-		PP_1776	0.65	-0.7
1,984,777	+		PP_1776	0.67	-3.7
1,984,777	+		PP_1776	0.67	+0.6
1,984,778	-		PP_1776	0.67	-0.9
1,984,778	-		PP_1776	0.67	-1.6
1,984,778	-		PP_1776	0.67	-0.7
1,984,801	+		PP_1776	0.69	-3.0
1,984,801	+		PP_1776	0.69	-1.5
1,984,802	-		PP_1776	0.69	-2.5
1,984,802	-		PP_1776	0.69	-3.5
1,984,832	+		PP_1776	0.71	-0.3
1,984,832	+		PP_1776	0.71	-3.0
1,984,833	-		PP_1776	0.71	-2.5
1,984,833	-		PP_1776	0.71	-1.4
1,984,859	+		PP_1776	0.73	-0.8
1,984,859	+		PP_1776	0.73	-3.3
1,984,900	+		PP_1776	0.76	-1.0
1,984,900	+		PP_1776	0.76	-3.4
1,984,900	+		PP_1776	0.76	-1.0
1,984,900	+		PP_1776	0.76	-0.4
1,984,935	+		PP_1776	0.78	-1.5
1,984,935	+		PP_1776	0.78	-0.4
1,984,935	+		PP_1776	0.78	-3.3
1,984,935	+		PP_1776	0.78	-0.4
1,984,935	+		PP_1776	0.78	+1.0
1,984,936	-		PP_1776	0.78	+0.3
1,984,936	-		PP_1776	0.78	-0.9
1,984,936	-		PP_1776	0.78	+0.0
1,984,936	-		PP_1776	0.78	-2.3
1,984,936	-		PP_1776	0.78	-2.8
1,984,936	-		PP_1776	0.78	-2.6
1,984,936	-		PP_1776	0.78	-2.1
1,985,165	-				-1.0
1,985,165	-				-2.8
1,985,165	-				-1.9
1,985,193	+				-1.0
1,985,194	-				+0.1
1,985,232	+				-0.4
1,985,233	-				-0.9
1,985,233	-				+0.3
1,985,233	-				-1.1
1,985,233	-				-3.2
1,985,368	+				+0.9
1,985,369	-				-3.0
1,985,369	-				-1.9
1,985,369	-				-2.5
1,985,369	-				-3.2
1,985,381	+				+1.0
1,985,381	+				+0.2
1,985,381	+				+0.4
1,985,381	+				-1.3
1,985,381	+				-0.9
1,985,381	+				+0.0
1,985,381	+				-1.4
1,985,381	+				+0.4
1,985,381	+				-0.3
1,985,381	+				-2.5
1,985,381	+				+1.4
1,985,381	+				+0.5
1,985,381	+				+1.4
1,985,381	+				+0.1
1,985,381	+				-2.2
1,985,381	+				-1.7
1,985,381	+				-0.4
1,985,381	+				-0.3
1,985,381	+				+0.6
1,985,381	+				+1.1
1,985,381	+				-0.4
1,985,381	+				+1.6
1,985,381	+				+0.6
1,985,381	+				-0.8
1,985,381	+				-0.8
1,985,382	-				-2.9
1,985,382	-				-2.4
1,985,382	-				-0.7
1,985,382	-				-3.4
1,985,382	-				-2.7
1,985,382	-				-2.4
1,985,382	-				-3.3
1,985,382	-				-2.6
1,985,382	-				+0.3
1,985,382	-				-1.0
1,985,382	-				-1.9
1,985,382	-				-0.6
1,985,382	-				-2.1
1,985,382	-				-2.1
1,985,382	-				-1.3
1,985,385	+				+0.4
1,985,385	+				-0.6
1,985,385	+				+0.2
1,985,386	-				-2.8
1,985,418	+				+0.1
1,985,418	+				+0.9
1,985,418	+				-0.2
1,985,419	-				-0.4
1,985,466	+				-0.3
1,985,467	-				-1.9
1,985,472	-				-3.1
1,985,472	-				-2.4
1,985,511	+				+0.7
1,985,511	+				-0.0
1,985,512	-				-0.9
1,985,512	-				-1.2
1,985,518	+				-0.5
1,985,518	+				-0.1
1,985,519	-		PP_1777	0.10	-2.5
1,985,519	-		PP_1777	0.10	-1.1
1,985,519	-		PP_1777	0.10	-0.9
1,985,597	+		PP_1777	0.16	+1.0
1,985,597	+		PP_1777	0.16	-1.2
1,985,599	+		PP_1777	0.16	-0.8
1,985,599	+		PP_1777	0.16	-0.3
1,985,599	+		PP_1777	0.16	+0.1
1,985,599	+		PP_1777	0.16	+0.7
1,985,600	-		PP_1777	0.16	-0.3
1,985,600	-		PP_1777	0.16	-1.6
1,985,600	-		PP_1777	0.16	-2.8
1,985,600	-		PP_1777	0.16	-0.7
1,985,600	-		PP_1777	0.16	-2.9
1,985,600	-		PP_1777	0.16	-3.3
1,985,603	+		PP_1777	0.16	+1.1
1,985,603	+		PP_1777	0.16	+0.8
1,985,604	-		PP_1777	0.16	-1.9
1,985,604	-		PP_1777	0.16	-3.2
1,985,604	-		PP_1777	0.16	-0.3
1,985,604	-		PP_1777	0.16	-2.2
1,985,604	-		PP_1777	0.16	-1.0
1,985,604	-		PP_1777	0.16	-1.0
1,985,631	+		PP_1777	0.18	+1.0
1,985,631	+		PP_1777	0.18	-0.8
1,985,631	+		PP_1777	0.18	-0.3
1,985,688	-		PP_1777	0.22	-0.5
1,985,700	+		PP_1777	0.23	+0.6
1,985,700	+		PP_1777	0.23	-2.3
1,985,700	+		PP_1777	0.23	-0.2
1,985,700	+		PP_1777	0.23	-2.2
1,985,701	-		PP_1777	0.23	-2.5
1,985,702	+		PP_1777	0.23	-2.1
1,985,738	+		PP_1777	0.26	+0.1
1,985,739	-		PP_1777	0.26	-2.8
1,985,739	-		PP_1777	0.26	-0.8
1,985,739	-		PP_1777	0.26	-2.5
1,985,851	-		PP_1777	0.34	-2.3
1,985,871	+		PP_1777	0.36	+1.8
1,985,871	+		PP_1777	0.36	-0.7
1,985,871	+		PP_1777	0.36	+0.0
1,985,871	+		PP_1777	0.36	+0.6
1,985,872	-		PP_1777	0.36	-3.4
1,985,872	-		PP_1777	0.36	-2.6
1,985,886	-		PP_1777	0.37	-2.4
1,985,922	-		PP_1777	0.40	-1.8
1,985,985	-		PP_1777	0.44	-1.8
1,986,037	+		PP_1777	0.48	-0.7
1,986,056	+		PP_1777	0.49	-0.1
1,986,056	+		PP_1777	0.49	-0.2
1,986,056	+		PP_1777	0.49	-0.0
1,986,057	-		PP_1777	0.50	-1.0
1,986,057	-		PP_1777	0.50	-2.7
1,986,057	-		PP_1777	0.50	-2.2
1,986,096	-		PP_1777	0.52	-3.4
1,986,162	+		PP_1777	0.57	+1.2
1,986,162	+		PP_1777	0.57	+0.3
1,986,163	-		PP_1777	0.57	-2.0
1,986,165	+		PP_1777	0.57	-1.9
1,986,165	+		PP_1777	0.57	+1.1
1,986,165	+		PP_1777	0.57	+0.0
1,986,165	+		PP_1777	0.57	-1.6
1,986,166	-		PP_1777	0.58	-3.4
1,986,166	-		PP_1777	0.58	-3.4
1,986,166	-		PP_1777	0.58	-2.7
1,986,166	-		PP_1777	0.58	-2.8
1,986,166	-		PP_1777	0.58	-2.5
1,986,166	-		PP_1777	0.58	-2.6
1,986,166	-		PP_1777	0.58	-3.1
1,986,166	-		PP_1777	0.58	-3.2
1,986,166	-		PP_1777	0.58	-3.6
1,986,166	-		PP_1777	0.58	-1.9
1,986,169	+		PP_1777	0.58	-0.3
1,986,169	+		PP_1777	0.58	-0.1
1,986,169	+		PP_1777	0.58	+0.5
1,986,170	-		PP_1777	0.58	-3.3
1,986,170	-		PP_1777	0.58	-1.9
1,986,170	-		PP_1777	0.58	-1.7
1,986,170	-		PP_1777	0.58	-1.8
1,986,170	-		PP_1777	0.58	-0.7
1,986,170	-		PP_1777	0.58	-2.5
1,986,343	+		PP_1777	0.71	-0.1
1,986,343	+		PP_1777	0.71	+0.2
1,986,343	+		PP_1777	0.71	+1.2
1,986,344	-		PP_1777	0.71	-2.1
1,986,344	-		PP_1777	0.71	-3.0
1,986,372	+		PP_1777	0.73	+0.0
1,986,405	-		PP_1777	0.75	-3.4
1,986,479	+		PP_1777	0.81	-0.7
1,986,479	+		PP_1777	0.81	+0.4
1,986,513	+		PP_1777	0.83	+0.4
1,986,530	+		PP_1777	0.84	-0.5
1,986,531	-		PP_1777	0.84	-3.0
1,986,607	+				+0.1
1,986,608	-				-2.8
1,986,608	-				-2.2
1,986,608	-				-2.9
1,986,742	-				-2.9
1,986,766	+				-3.0
1,986,769	-				-2.7
1,986,791	-				-2.0
1,986,860	-		PP_1778	0.14	-3.7
1,986,887	+		PP_1778	0.18	-2.6
1,986,887	+				-0.1
1,986,887	+		PP_1778	0.18	-2.5
1,986,887	+		PP_1778	0.18	-2.4
1,986,887	+		PP_1778	0.18	-2.7
1,986,888	-		PP_1778	0.18	-2.0
1,986,888	-		PP_1778	0.18	-3.1
1,986,909	+		PP_1778	0.21	-0.2
1,986,910	-		PP_1778	0.21	-3.6
1,986,940	+		PP_1778	0.24	-3.5
1,986,940	+		PP_1778	0.24	-2.5
1,986,944	+		PP_1778	0.25	-2.9
1,986,950	+		PP_1778	0.26	-2.4
1,986,960	-		PP_1778	0.27	-0.5
1,987,046	-		PP_1778	0.38	-3.0
1,987,180	-		PP_1778	0.55	-2.6
1,987,236	+		PP_1778	0.62	-3.2
1,987,237	-		PP_1778	0.62	-2.8
1,987,281	+		PP_1778	0.67	-1.8
1,987,282	-		PP_1778	0.67	-3.4
1,987,413	+		PP_1778	0.84	-2.2
1,987,414	-		PP_1778	0.84	-2.5
1,987,533	+				-1.8
1,987,533	+				-2.7
1,987,534	-				-2.6
1,987,534	-				-3.3
1,987,534	-				-2.9
1,987,534	-				-3.5
1,987,534	-				-3.2
1,987,534	-				-2.4
1,987,534	-				-3.2
1,987,536	+				-2.3
1,987,536	+				-1.1
1,987,536	+				-3.1
1,987,536	+				-3.4
1,987,536	+				-2.3
1,987,537	-				-2.6