Experiment: Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0481 and PP_0482 are separated by 163 nucleotides PP_0482 and PP_0483 are separated by 72 nucleotides PP_0483 and PP_0484 are separated by 129 nucleotides
PP_0481: PP_0481 - Catalase, at 564,521 to 565,960
_0481
PP_0482: PP_0482 - bacterioferritin, at 566,124 to 566,588
_0482
PP_0483: PP_0483 - excinuclease (uvrABC system protein A), at 566,661 to 569,495
_0483
PP_0484: PP_0484 - transporter of an unknown substrate, at 569,625 to 571,019
_0484
Position (kb) 566
567
568
569
570 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 565.673 kb on + strand, within PP_0481 at 565.762 kb on + strand, within PP_0481 at 565.769 kb on + strand, within PP_0481 at 565.770 kb on - strand, within PP_0481 at 565.834 kb on + strand at 565.834 kb on + strand at 565.887 kb on + strand at 565.887 kb on + strand at 565.887 kb on + strand at 565.892 kb on + strand at 565.892 kb on + strand at 565.893 kb on - strand at 565.917 kb on - strand at 566.010 kb on + strand at 566.011 kb on - strand at 566.066 kb on - strand at 566.066 kb on - strand at 566.086 kb on + strand at 566.086 kb on + strand at 566.086 kb on + strand at 566.086 kb on + strand at 566.087 kb on - strand at 566.095 kb on + strand at 566.095 kb on + strand at 566.096 kb on - strand at 566.143 kb on + strand at 566.144 kb on - strand at 566.144 kb on - strand at 566.144 kb on - strand at 566.144 kb on - strand at 566.151 kb on + strand at 566.151 kb on + strand at 566.152 kb on - strand at 566.152 kb on - strand at 566.196 kb on + strand, within PP_0482 at 566.196 kb on + strand, within PP_0482 at 566.196 kb on + strand, within PP_0482 at 566.217 kb on + strand, within PP_0482 at 566.218 kb on - strand, within PP_0482 at 566.218 kb on - strand, within PP_0482 at 566.244 kb on + strand, within PP_0482 at 566.360 kb on + strand, within PP_0482 at 566.361 kb on - strand, within PP_0482 at 566.403 kb on + strand, within PP_0482 at 566.403 kb on + strand, within PP_0482 at 566.404 kb on - strand, within PP_0482 at 566.404 kb on - strand, within PP_0482 at 566.460 kb on + strand, within PP_0482 at 566.460 kb on + strand, within PP_0482 at 566.460 kb on + strand, within PP_0482 at 566.460 kb on + strand, within PP_0482 at 566.460 kb on + strand, within PP_0482 at 566.461 kb on - strand, within PP_0482 at 566.461 kb on - strand, within PP_0482 at 566.461 kb on - strand, within PP_0482 at 566.517 kb on + strand, within PP_0482 at 566.518 kb on - strand, within PP_0482 at 566.518 kb on - strand, within PP_0482 at 566.586 kb on + strand at 566.586 kb on + strand at 566.586 kb on + strand at 566.586 kb on + strand at 566.587 kb on - strand at 566.587 kb on - strand at 566.587 kb on - strand at 566.587 kb on - strand at 566.587 kb on - strand at 566.587 kb on - strand at 566.607 kb on + strand at 566.630 kb on - strand at 566.659 kb on - strand at 567.220 kb on + strand, within PP_0483 at 567.970 kb on + strand, within PP_0483 at 569.518 kb on - strand at 569.529 kb on + strand at 569.530 kb on - strand at 569.530 kb on - strand at 569.567 kb on - strand at 569.705 kb on + strand at 569.706 kb on - strand at 569.734 kb on + strand at 569.745 kb on + strand at 569.802 kb on + strand, within PP_0484 at 569.802 kb on + strand, within PP_0484 at 569.803 kb on - strand, within PP_0484 at 569.803 kb on - strand, within PP_0484 at 569.878 kb on - strand, within PP_0484 at 569.911 kb on + strand, within PP_0484 at 569.911 kb on + strand, within PP_0484 at 569.912 kb on - strand, within PP_0484 at 569.912 kb on - strand, within PP_0484 at 569.933 kb on + strand, within PP_0484 at 570.393 kb on + strand, within PP_0484 at 570.394 kb on - strand at 570.394 kb on - strand, within PP_0484 at 570.444 kb on + strand, within PP_0484 at 570.444 kb on + strand, within PP_0484 at 570.444 kb on + strand, within PP_0484 at 570.445 kb on - strand, within PP_0484 at 570.445 kb on - strand, within PP_0484 at 570.445 kb on - strand, within PP_0484
Per-strain Table
Position Strand Gene LocusTag Fraction Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs remove 565,673 + PP_0481 0.80 -1.1 565,762 + PP_0481 0.86 +1.6 565,769 + PP_0481 0.87 -0.4 565,770 - PP_0481 0.87 -0.2 565,834 + +0.6 565,834 + -1.0 565,887 + -0.6 565,887 + +0.2 565,887 + -0.4 565,892 + -0.8 565,892 + +0.6 565,893 - +0.7 565,917 - -1.5 566,010 + +1.1 566,011 - -0.8 566,066 - +0.4 566,066 - +0.3 566,086 + +1.4 566,086 + -0.0 566,086 + -0.5 566,086 + +0.9 566,087 - -2.1 566,095 + +0.6 566,095 + +0.0 566,096 - +0.7 566,143 + -0.6 566,144 - -0.4 566,144 - +0.1 566,144 - +0.6 566,144 - -0.8 566,151 + +0.9 566,151 + -0.7 566,152 - +0.5 566,152 - +0.5 566,196 + PP_0482 0.15 +0.7 566,196 + PP_0482 0.15 +0.1 566,196 + PP_0482 0.15 -0.6 566,217 + PP_0482 0.20 +2.0 566,218 - PP_0482 0.20 -0.6 566,218 - PP_0482 0.20 -0.4 566,244 + PP_0482 0.26 +0.5 566,360 + PP_0482 0.51 +0.4 566,361 - PP_0482 0.51 -1.2 566,403 + PP_0482 0.60 -0.0 566,403 + PP_0482 0.60 -0.2 566,404 - PP_0482 0.60 +0.1 566,404 - PP_0482 0.60 +0.7 566,460 + PP_0482 0.72 +2.5 566,460 + PP_0482 0.72 -0.1 566,460 + PP_0482 0.72 -0.3 566,460 + PP_0482 0.72 -3.1 566,460 + PP_0482 0.72 -0.1 566,461 - PP_0482 0.72 -0.4 566,461 - PP_0482 0.72 +1.7 566,461 - PP_0482 0.72 +0.8 566,517 + PP_0482 0.85 -1.0 566,518 - PP_0482 0.85 -1.5 566,518 - PP_0482 0.85 -1.2 566,586 + -1.5 566,586 + +0.1 566,586 + +0.4 566,586 + -0.6 566,587 - +0.4 566,587 - +0.1 566,587 - -0.5 566,587 - +0.5 566,587 - +0.7 566,587 - +0.6 566,607 + -1.5 566,630 - +0.2 566,659 - +0.5 567,220 + PP_0483 0.20 +2.4 567,970 + PP_0483 0.46 +0.4 569,518 - -0.2 569,529 + +4.0 569,530 - -2.4 569,530 - -0.2 569,567 - -0.0 569,705 + -0.4 569,706 - -1.4 569,734 + -0.2 569,745 + -0.6 569,802 + PP_0484 0.13 -0.1 569,802 + PP_0484 0.13 +0.6 569,803 - PP_0484 0.13 -1.4 569,803 - PP_0484 0.13 -0.6 569,878 - PP_0484 0.18 -0.0 569,911 + PP_0484 0.21 -1.1 569,911 + PP_0484 0.21 -0.7 569,912 - PP_0484 0.21 +1.0 569,912 - PP_0484 0.21 -0.6 569,933 + PP_0484 0.22 -0.6 570,393 + PP_0484 0.55 -0.8 570,394 - +1.2 570,394 - PP_0484 0.55 -0.9 570,444 + PP_0484 0.59 +1.8 570,444 + PP_0484 0.59 -0.3 570,444 + PP_0484 0.59 +0.5 570,445 - PP_0484 0.59 -0.9 570,445 - PP_0484 0.59 -0.0 570,445 - PP_0484 0.59 +0.3
Or see this region's nucleotide sequence