Experiment: Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_4544 and PP_4545 are separated by 200 nucleotides PP_4545 and PP_4546 are separated by 123 nucleotides
PP_4544: PP_4544 - conserved exported protein of unknown function, at 5,161,233 to 5,162,477
_4544
PP_4545: PP_4545 - beta-ketodecanoyl-(Acyl-carrier-protein) synthase, at 5,162,678 to 5,163,850
_4545
PP_4546: PP_4546 - ATP-dependent helicase HrpA, at 5,163,974 to 5,167,879
_4546
Position (kb) 5162
5163
5164 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 5161.683 kb on + strand, within PP_4544 at 5161.683 kb on + strand, within PP_4544 at 5161.683 kb on + strand, within PP_4544 at 5161.684 kb on - strand, within PP_4544 at 5161.684 kb on - strand, within PP_4544 at 5161.684 kb on - strand, within PP_4544 at 5161.719 kb on + strand, within PP_4544 at 5161.719 kb on + strand, within PP_4544 at 5161.848 kb on + strand, within PP_4544 at 5161.848 kb on + strand, within PP_4544 at 5161.848 kb on + strand, within PP_4544 at 5161.848 kb on + strand, within PP_4544 at 5161.849 kb on - strand, within PP_4544 at 5161.849 kb on - strand, within PP_4544 at 5161.849 kb on - strand, within PP_4544 at 5161.896 kb on + strand, within PP_4544 at 5161.897 kb on - strand, within PP_4544 at 5161.897 kb on - strand, within PP_4544 at 5161.935 kb on + strand, within PP_4544 at 5161.936 kb on - strand, within PP_4544 at 5161.936 kb on - strand, within PP_4544 at 5161.957 kb on - strand, within PP_4544 at 5161.957 kb on - strand, within PP_4544 at 5162.025 kb on + strand, within PP_4544 at 5162.025 kb on + strand, within PP_4544 at 5162.025 kb on + strand, within PP_4544 at 5162.025 kb on + strand, within PP_4544 at 5162.025 kb on + strand, within PP_4544 at 5162.025 kb on + strand, within PP_4544 at 5162.025 kb on + strand, within PP_4544 at 5162.026 kb on - strand, within PP_4544 at 5162.026 kb on - strand, within PP_4544 at 5162.026 kb on - strand, within PP_4544 at 5162.026 kb on - strand, within PP_4544 at 5162.026 kb on - strand, within PP_4544 at 5162.026 kb on - strand, within PP_4544 at 5162.026 kb on - strand, within PP_4544 at 5162.026 kb on - strand, within PP_4544 at 5162.026 kb on - strand, within PP_4544 at 5162.151 kb on + strand, within PP_4544 at 5162.160 kb on + strand, within PP_4544 at 5162.160 kb on + strand at 5162.161 kb on - strand, within PP_4544 at 5162.247 kb on + strand, within PP_4544 at 5162.247 kb on + strand, within PP_4544 at 5162.317 kb on - strand, within PP_4544 at 5162.352 kb on + strand, within PP_4544 at 5162.476 kb on - strand at 5162.597 kb on - strand at 5162.625 kb on + strand at 5162.625 kb on + strand at 5162.626 kb on - strand at 5162.701 kb on + strand at 5162.701 kb on + strand at 5162.701 kb on + strand at 5162.769 kb on + strand at 5162.770 kb on - strand at 5162.806 kb on + strand, within PP_4545 at 5162.807 kb on - strand, within PP_4545 at 5163.020 kb on + strand, within PP_4545 at 5163.020 kb on + strand, within PP_4545 at 5163.021 kb on - strand, within PP_4545 at 5163.021 kb on - strand, within PP_4545 at 5163.021 kb on - strand, within PP_4545 at 5163.291 kb on - strand, within PP_4545 at 5163.295 kb on + strand, within PP_4545 at 5163.296 kb on - strand, within PP_4545 at 5163.766 kb on - strand at 5163.766 kb on - strand at 5163.766 kb on - strand at 5163.766 kb on - strand at 5163.766 kb on - strand at 5163.794 kb on - strand at 5163.859 kb on - strand at 5163.870 kb on - strand at 5163.888 kb on + strand at 5163.888 kb on + strand at 5163.888 kb on + strand at 5163.888 kb on + strand at 5163.889 kb on - strand at 5163.889 kb on - strand at 5163.889 kb on - strand at 5163.889 kb on - strand at 5163.889 kb on - strand at 5163.889 kb on - strand at 5163.889 kb on - strand at 5163.889 kb on - strand at 5163.965 kb on + strand at 5163.965 kb on + strand at 5163.966 kb on - strand at 5163.966 kb on - strand at 5164.147 kb on - strand at 5164.196 kb on + strand at 5164.297 kb on - strand at 5164.297 kb on - strand at 5164.310 kb on + strand at 5164.565 kb on + strand, within PP_4546
Per-strain Table
Position Strand Gene LocusTag Fraction Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs remove 5,161,683 + PP_4544 0.36 -0.1 5,161,683 + PP_4544 0.36 -0.4 5,161,683 + PP_4544 0.36 -0.0 5,161,684 - PP_4544 0.36 +1.8 5,161,684 - PP_4544 0.36 -0.5 5,161,684 - PP_4544 0.36 +0.2 5,161,719 + PP_4544 0.39 +0.1 5,161,719 + PP_4544 0.39 -0.3 5,161,848 + PP_4544 0.49 -0.4 5,161,848 + PP_4544 0.49 -0.8 5,161,848 + PP_4544 0.49 +1.0 5,161,848 + PP_4544 0.49 -0.5 5,161,849 - PP_4544 0.49 -0.0 5,161,849 - PP_4544 0.49 +0.7 5,161,849 - PP_4544 0.49 +0.4 5,161,896 + PP_4544 0.53 +2.2 5,161,897 - PP_4544 0.53 -2.2 5,161,897 - PP_4544 0.53 -0.1 5,161,935 + PP_4544 0.56 +1.3 5,161,936 - PP_4544 0.56 -3.4 5,161,936 - PP_4544 0.56 +2.9 5,161,957 - PP_4544 0.58 +0.6 5,161,957 - PP_4544 0.58 -1.8 5,162,025 + PP_4544 0.64 -2.9 5,162,025 + PP_4544 0.64 +0.3 5,162,025 + PP_4544 0.64 -0.0 5,162,025 + PP_4544 0.64 +0.3 5,162,025 + PP_4544 0.64 -1.7 5,162,025 + PP_4544 0.64 -0.2 5,162,025 + PP_4544 0.64 -0.3 5,162,026 - PP_4544 0.64 -2.0 5,162,026 - PP_4544 0.64 -0.9 5,162,026 - PP_4544 0.64 +0.3 5,162,026 - PP_4544 0.64 +0.9 5,162,026 - PP_4544 0.64 +0.1 5,162,026 - PP_4544 0.64 +0.5 5,162,026 - PP_4544 0.64 +0.9 5,162,026 - PP_4544 0.64 -1.2 5,162,026 - PP_4544 0.64 -0.5 5,162,151 + PP_4544 0.74 -1.3 5,162,160 + PP_4544 0.74 -0.3 5,162,160 + +0.2 5,162,161 - PP_4544 0.75 -1.6 5,162,247 + PP_4544 0.81 +1.6 5,162,247 + PP_4544 0.81 +0.9 5,162,317 - PP_4544 0.87 +0.1 5,162,352 + PP_4544 0.90 -1.1 5,162,476 - -2.7 5,162,597 - +0.4 5,162,625 + +2.1 5,162,625 + +0.3 5,162,626 - -0.9 5,162,701 + -1.8 5,162,701 + +1.1 5,162,701 + -0.5 5,162,769 + -1.1 5,162,770 - -1.3 5,162,806 + PP_4545 0.11 -1.9 5,162,807 - PP_4545 0.11 -2.6 5,163,020 + PP_4545 0.29 +0.7 5,163,020 + PP_4545 0.29 -0.3 5,163,021 - PP_4545 0.29 -0.6 5,163,021 - PP_4545 0.29 -2.0 5,163,021 - PP_4545 0.29 -0.4 5,163,291 - PP_4545 0.52 -0.3 5,163,295 + PP_4545 0.53 -1.8 5,163,296 - PP_4545 0.53 -1.0 5,163,766 - +0.0 5,163,766 - -0.1 5,163,766 - -0.2 5,163,766 - +0.6 5,163,766 - -0.4 5,163,794 - +0.1 5,163,859 - -0.5 5,163,870 - -1.9 5,163,888 + +0.4 5,163,888 + +0.8 5,163,888 + -1.0 5,163,888 + -3.1 5,163,889 - +0.9 5,163,889 - -1.6 5,163,889 - -1.6 5,163,889 - -0.4 5,163,889 - -0.5 5,163,889 - +0.8 5,163,889 - -0.0 5,163,889 - -1.0 5,163,965 + +0.5 5,163,965 + -0.0 5,163,966 - -1.0 5,163,966 - +1.3 5,164,147 - -0.5 5,164,196 + +0.6 5,164,297 - +1.2 5,164,297 - -1.5 5,164,310 + +1.4 5,164,565 + PP_4546 0.15 -0.2
Or see this region's nucleotide sequence