Experiment: Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_4497 and PP_4498 overlap by 14 nucleotides PP_4498 and PP_4499 overlap by 37 nucleotides PP_4499 and PP_4500 overlap by 23 nucleotides PP_4500 and PP_4501 are separated by 67 nucleotides
PP_4497: PP_4497 - conserved protein of unknown function, at 5,112,677 to 5,113,444
_4497
PP_4498: PP_4498 - Segregation and condensation protein A, at 5,113,431 to 5,114,318
_4498
PP_4499: PP_4499 - putative maturation enzyme, at 5,114,282 to 5,114,947
_4499
PP_4500: PP_4500 - TrpH family protein, at 5,114,925 to 5,115,785
_4500
PP_4501: PP_4501 - Probable intracellular septation protein A, at 5,115,853 to 5,116,446
_4501
Position (kb) 5114
5115 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 5113.356 kb on + strand, within PP_4497 at 5113.357 kb on - strand, within PP_4497 at 5113.773 kb on + strand, within PP_4498 at 5113.773 kb on + strand, within PP_4498 at 5113.870 kb on + strand, within PP_4498 at 5113.870 kb on + strand, within PP_4498 at 5113.871 kb on - strand, within PP_4498 at 5113.991 kb on - strand, within PP_4498 at 5114.013 kb on + strand, within PP_4498 at 5114.014 kb on - strand, within PP_4498 at 5114.014 kb on - strand, within PP_4498 at 5114.035 kb on + strand, within PP_4498 at 5114.035 kb on + strand, within PP_4498 at 5114.036 kb on - strand, within PP_4498 at 5114.036 kb on - strand, within PP_4498 at 5114.036 kb on - strand, within PP_4498 at 5114.044 kb on + strand at 5114.044 kb on + strand, within PP_4498 at 5114.044 kb on + strand, within PP_4498 at 5114.045 kb on - strand, within PP_4498 at 5114.045 kb on - strand, within PP_4498 at 5114.045 kb on - strand, within PP_4498 at 5114.045 kb on - strand, within PP_4498 at 5114.087 kb on + strand, within PP_4498 at 5114.087 kb on + strand, within PP_4498 at 5114.087 kb on + strand, within PP_4498 at 5114.087 kb on + strand, within PP_4498 at 5114.107 kb on + strand, within PP_4498 at 5114.173 kb on + strand, within PP_4498 at 5114.173 kb on + strand, within PP_4498 at 5114.173 kb on + strand, within PP_4498 at 5114.174 kb on - strand, within PP_4498 at 5114.174 kb on - strand, within PP_4498 at 5114.209 kb on + strand, within PP_4498 at 5114.561 kb on - strand, within PP_4499 at 5114.679 kb on + strand, within PP_4499 at 5114.680 kb on - strand, within PP_4499 at 5114.780 kb on + strand, within PP_4499 at 5114.780 kb on + strand, within PP_4499 at 5114.862 kb on - strand, within PP_4499 at 5114.913 kb on + strand at 5114.913 kb on + strand at 5114.914 kb on - strand at 5115.149 kb on + strand, within PP_4500 at 5115.150 kb on - strand, within PP_4500 at 5115.150 kb on - strand, within PP_4500 at 5115.150 kb on - strand, within PP_4500 at 5115.151 kb on + strand, within PP_4500 at 5115.151 kb on + strand, within PP_4500 at 5115.193 kb on + strand, within PP_4500 at 5115.193 kb on + strand, within PP_4500 at 5115.194 kb on - strand, within PP_4500 at 5115.785 kb on + strand at 5115.785 kb on + strand at 5115.818 kb on + strand at 5115.818 kb on + strand at 5115.818 kb on + strand at 5115.818 kb on + strand at 5115.819 kb on - strand at 5115.821 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs remove 5,113,356 + PP_4497 0.88 +0.5 5,113,357 - PP_4497 0.89 -1.5 5,113,773 + PP_4498 0.39 +0.4 5,113,773 + PP_4498 0.39 -0.1 5,113,870 + PP_4498 0.49 +0.5 5,113,870 + PP_4498 0.49 -0.1 5,113,871 - PP_4498 0.50 +0.3 5,113,991 - PP_4498 0.63 -0.6 5,114,013 + PP_4498 0.66 +0.3 5,114,014 - PP_4498 0.66 -2.6 5,114,014 - PP_4498 0.66 +1.1 5,114,035 + PP_4498 0.68 +1.2 5,114,035 + PP_4498 0.68 -0.1 5,114,036 - PP_4498 0.68 +1.6 5,114,036 - PP_4498 0.68 +1.0 5,114,036 - PP_4498 0.68 +1.3 5,114,044 + +0.4 5,114,044 + PP_4498 0.69 -0.1 5,114,044 + PP_4498 0.69 +1.0 5,114,045 - PP_4498 0.69 +1.5 5,114,045 - PP_4498 0.69 -0.4 5,114,045 - PP_4498 0.69 +1.2 5,114,045 - PP_4498 0.69 +0.1 5,114,087 + PP_4498 0.74 +0.8 5,114,087 + PP_4498 0.74 +0.6 5,114,087 + PP_4498 0.74 -1.5 5,114,087 + PP_4498 0.74 -1.2 5,114,107 + PP_4498 0.76 -1.5 5,114,173 + PP_4498 0.84 +0.3 5,114,173 + PP_4498 0.84 +1.0 5,114,173 + PP_4498 0.84 -1.9 5,114,174 - PP_4498 0.84 -1.0 5,114,174 - PP_4498 0.84 +1.1 5,114,209 + PP_4498 0.88 +2.1 5,114,561 - PP_4499 0.42 +0.9 5,114,679 + PP_4499 0.60 +0.1 5,114,680 - PP_4499 0.60 +1.7 5,114,780 + PP_4499 0.75 +1.0 5,114,780 + PP_4499 0.75 +0.6 5,114,862 - PP_4499 0.87 +0.4 5,114,913 + +0.5 5,114,913 + +0.8 5,114,914 - -1.5 5,115,149 + PP_4500 0.26 +0.4 5,115,150 - PP_4500 0.26 -1.4 5,115,150 - PP_4500 0.26 +0.8 5,115,150 - PP_4500 0.26 +2.0 5,115,151 + PP_4500 0.26 -2.1 5,115,151 + PP_4500 0.26 +1.1 5,115,193 + PP_4500 0.31 +0.1 5,115,193 + PP_4500 0.31 -0.4 5,115,194 - PP_4500 0.31 -0.1 5,115,785 + +1.3 5,115,785 + +1.5 5,115,818 + -0.8 5,115,818 + +0.9 5,115,818 + +3.7 5,115,818 + +0.6 5,115,819 - +1.9 5,115,821 + +0.5
Or see this region's nucleotide sequence