Experiment: Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_4162 and PP_4163 are separated by 12 nucleotides PP_4163 and PP_4164 are separated by 109 nucleotides PP_4164 and PP_4165 overlap by 4 nucleotides
PP_4162: PP_4162 - conserved membrane protein of unknown function, at 4,705,439 to 4,706,491
_4162
PP_4163: PP_4163 - conserved exported protein of unknown function, at 4,706,504 to 4,707,298
_4163
PP_4164: PP_4164 - Alpha/beta hydrolase, at 4,707,408 to 4,708,262
_4164
PP_4165: PP_4165 - conserved protein of unknown function, at 4,708,259 to 4,709,122
_4165
Position (kb) 4706
4707
4708 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4705.906 kb on - strand, within PP_4162 at 4706.077 kb on - strand, within PP_4162 at 4706.092 kb on + strand, within PP_4162 at 4706.092 kb on + strand, within PP_4162 at 4706.092 kb on + strand, within PP_4162 at 4706.092 kb on + strand, within PP_4162 at 4706.093 kb on - strand, within PP_4162 at 4706.225 kb on - strand, within PP_4162 at 4706.672 kb on + strand, within PP_4163 at 4706.706 kb on + strand, within PP_4163 at 4706.747 kb on - strand, within PP_4163 at 4706.809 kb on - strand, within PP_4163 at 4706.809 kb on - strand, within PP_4163 at 4706.839 kb on - strand, within PP_4163 at 4706.839 kb on - strand, within PP_4163 at 4707.009 kb on - strand, within PP_4163 at 4707.050 kb on - strand, within PP_4163 at 4707.069 kb on + strand, within PP_4163 at 4707.434 kb on + strand at 4707.434 kb on + strand at 4707.601 kb on + strand, within PP_4164 at 4707.601 kb on + strand, within PP_4164 at 4707.602 kb on - strand, within PP_4164 at 4707.602 kb on - strand, within PP_4164 at 4707.673 kb on + strand, within PP_4164 at 4707.674 kb on - strand, within PP_4164 at 4707.785 kb on - strand, within PP_4164 at 4708.024 kb on + strand, within PP_4164 at 4708.025 kb on - strand, within PP_4164 at 4708.069 kb on + strand, within PP_4164 at 4708.104 kb on + strand, within PP_4164 at 4708.104 kb on + strand, within PP_4164 at 4708.105 kb on - strand, within PP_4164 at 4708.105 kb on - strand, within PP_4164 at 4708.220 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs remove 4,705,906 - PP_4162 0.44 +0.3 4,706,077 - PP_4162 0.61 +0.7 4,706,092 + PP_4162 0.62 -0.5 4,706,092 + PP_4162 0.62 +0.5 4,706,092 + PP_4162 0.62 +0.4 4,706,092 + PP_4162 0.62 -2.6 4,706,093 - PP_4162 0.62 -2.6 4,706,225 - PP_4162 0.75 -0.8 4,706,672 + PP_4163 0.21 +0.4 4,706,706 + PP_4163 0.25 +2.2 4,706,747 - PP_4163 0.31 -0.5 4,706,809 - PP_4163 0.38 +1.6 4,706,809 - PP_4163 0.38 +0.6 4,706,839 - PP_4163 0.42 +1.1 4,706,839 - PP_4163 0.42 +0.4 4,707,009 - PP_4163 0.64 +0.4 4,707,050 - PP_4163 0.69 -1.4 4,707,069 + PP_4163 0.71 +0.8 4,707,434 + +0.4 4,707,434 + +1.0 4,707,601 + PP_4164 0.23 -0.6 4,707,601 + PP_4164 0.23 -0.6 4,707,602 - PP_4164 0.23 +0.4 4,707,602 - PP_4164 0.23 -2.0 4,707,673 + PP_4164 0.31 -1.2 4,707,674 - PP_4164 0.31 -1.4 4,707,785 - PP_4164 0.44 +1.3 4,708,024 + PP_4164 0.72 +0.1 4,708,025 - PP_4164 0.72 +0.1 4,708,069 + PP_4164 0.77 -0.1 4,708,104 + PP_4164 0.81 -1.3 4,708,104 + PP_4164 0.81 -0.9 4,708,105 - PP_4164 0.82 +0.2 4,708,105 - PP_4164 0.82 +0.6 4,708,220 + +1.1
Or see this region's nucleotide sequence