Experiment: Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0767 and PP_0768 are separated by 159 nucleotides PP_0768 and PP_0769 overlap by 4 nucleotides PP_0769 and PP_0770 are separated by 193 nucleotides
PP_0767: PP_0767 - Transcriptional regulator, LuxR family, at 884,090 to 886,807
_0767
PP_0768: PP_0768 - Response regulator/TPR domain protein, at 886,967 to 888,574
_0768
PP_0769: PP_0769 - Sensor histidine kinase, at 888,571 to 889,263
_0769
PP_0770: PP_0770 - PemI-like protein, at 889,457 to 889,711
_0770
Position (kb) 886
887
888
889 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 886.100 kb on + strand, within PP_0767 at 886.100 kb on + strand, within PP_0767 at 886.101 kb on - strand, within PP_0767 at 886.200 kb on - strand, within PP_0767 at 886.200 kb on - strand, within PP_0767 at 886.200 kb on - strand, within PP_0767 at 886.200 kb on - strand, within PP_0767 at 886.200 kb on - strand, within PP_0767 at 886.297 kb on + strand, within PP_0767 at 886.333 kb on - strand, within PP_0767 at 886.367 kb on - strand, within PP_0767 at 886.367 kb on - strand, within PP_0767 at 886.367 kb on - strand, within PP_0767 at 886.367 kb on - strand, within PP_0767 at 886.600 kb on + strand at 886.809 kb on - strand at 886.820 kb on - strand at 886.820 kb on - strand at 886.820 kb on - strand at 886.820 kb on - strand at 886.820 kb on - strand at 886.834 kb on + strand at 886.835 kb on - strand at 886.835 kb on - strand at 886.856 kb on - strand at 886.856 kb on - strand at 886.856 kb on - strand at 886.858 kb on + strand at 886.858 kb on + strand at 886.859 kb on - strand at 886.878 kb on - strand at 886.878 kb on - strand at 886.878 kb on - strand at 886.878 kb on - strand at 886.906 kb on + strand at 886.907 kb on - strand at 886.912 kb on + strand at 886.977 kb on - strand at 887.024 kb on - strand at 887.024 kb on - strand at 887.120 kb on + strand at 887.120 kb on + strand at 887.121 kb on - strand at 887.294 kb on + strand, within PP_0768 at 887.294 kb on + strand, within PP_0768 at 887.412 kb on + strand, within PP_0768 at 887.565 kb on + strand, within PP_0768 at 887.566 kb on - strand, within PP_0768 at 887.566 kb on - strand, within PP_0768 at 887.567 kb on + strand, within PP_0768 at 887.567 kb on + strand, within PP_0768 at 887.568 kb on - strand, within PP_0768 at 887.669 kb on + strand, within PP_0768 at 887.867 kb on + strand, within PP_0768 at 888.221 kb on + strand, within PP_0768 at 888.333 kb on - strand, within PP_0768 at 888.530 kb on + strand at 888.779 kb on - strand, within PP_0769 at 888.779 kb on - strand, within PP_0769 at 888.806 kb on + strand, within PP_0769 at 888.806 kb on + strand, within PP_0769 at 888.817 kb on + strand, within PP_0769 at 888.869 kb on + strand, within PP_0769 at 888.869 kb on + strand, within PP_0769 at 888.870 kb on - strand, within PP_0769 at 888.870 kb on - strand, within PP_0769 at 889.103 kb on - strand, within PP_0769 at 889.103 kb on - strand, within PP_0769 at 889.103 kb on - strand, within PP_0769 at 889.151 kb on - strand, within PP_0769 at 889.211 kb on + strand at 889.211 kb on + strand at 889.211 kb on + strand at 889.257 kb on - strand at 889.278 kb on + strand at 889.278 kb on + strand at 889.324 kb on + strand at 889.324 kb on + strand at 889.382 kb on + strand at 889.383 kb on - strand at 889.383 kb on - strand at 889.383 kb on - strand at 889.383 kb on - strand at 889.387 kb on - strand at 889.430 kb on - strand at 889.430 kb on - strand at 889.432 kb on + strand at 889.432 kb on + strand at 889.432 kb on + strand at 889.432 kb on + strand at 889.432 kb on + strand at 889.432 kb on + strand at 889.433 kb on - strand at 889.433 kb on - strand at 889.433 kb on - strand at 889.433 kb on - strand at 889.433 kb on - strand at 889.433 kb on - strand at 889.433 kb on - strand at 889.433 kb on - strand at 889.433 kb on - strand at 889.436 kb on + strand at 889.436 kb on + strand at 889.436 kb on + strand at 889.436 kb on + strand at 889.436 kb on + strand at 889.436 kb on + strand at 889.436 kb on + strand at 889.437 kb on - strand at 889.437 kb on - strand at 889.437 kb on - strand at 889.437 kb on - strand at 889.437 kb on - strand at 889.437 kb on - strand at 889.437 kb on - strand at 889.437 kb on - strand at 889.437 kb on - strand at 889.437 kb on - strand at 889.440 kb on + strand at 889.441 kb on - strand at 889.452 kb on + strand at 889.453 kb on - strand at 889.453 kb on - strand at 889.453 kb on - strand at 889.515 kb on + strand, within PP_0770
Per-strain Table
Position Strand Gene LocusTag Fraction Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs remove 886,100 + PP_0767 0.74 -0.7 886,100 + PP_0767 0.74 +0.0 886,101 - PP_0767 0.74 -1.0 886,200 - PP_0767 0.78 -0.0 886,200 - PP_0767 0.78 +0.4 886,200 - PP_0767 0.78 -0.2 886,200 - PP_0767 0.78 -1.5 886,200 - PP_0767 0.78 +0.3 886,297 + PP_0767 0.81 -1.3 886,333 - PP_0767 0.83 -1.1 886,367 - PP_0767 0.84 -0.3 886,367 - PP_0767 0.84 -2.8 886,367 - PP_0767 0.84 +0.4 886,367 - PP_0767 0.84 -1.8 886,600 + +0.3 886,809 - +2.2 886,820 - +0.0 886,820 - +0.7 886,820 - -1.4 886,820 - +2.9 886,820 - -1.4 886,834 + +0.1 886,835 - +1.3 886,835 - -1.7 886,856 - -0.1 886,856 - -1.7 886,856 - -0.5 886,858 + -1.5 886,858 + +4.0 886,859 - +1.7 886,878 - +0.1 886,878 - -2.4 886,878 - -0.1 886,878 - +0.2 886,906 + +1.0 886,907 - +0.4 886,912 + +0.0 886,977 - -1.0 887,024 - +0.2 887,024 - +0.4 887,120 + -0.6 887,120 + -2.0 887,121 - -1.4 887,294 + PP_0768 0.20 -0.2 887,294 + PP_0768 0.20 -1.0 887,412 + PP_0768 0.28 -0.2 887,565 + PP_0768 0.37 -0.1 887,566 - PP_0768 0.37 +0.3 887,566 - PP_0768 0.37 -1.4 887,567 + PP_0768 0.37 -1.5 887,567 + PP_0768 0.37 -0.7 887,568 - PP_0768 0.37 -0.7 887,669 + PP_0768 0.44 -2.7 887,867 + PP_0768 0.56 -0.7 888,221 + PP_0768 0.78 -1.0 888,333 - PP_0768 0.85 +1.6 888,530 + +0.5 888,779 - PP_0769 0.30 -0.4 888,779 - PP_0769 0.30 -0.7 888,806 + PP_0769 0.34 -0.2 888,806 + PP_0769 0.34 +3.4 888,817 + PP_0769 0.35 +0.7 888,869 + PP_0769 0.43 -0.0 888,869 + PP_0769 0.43 -0.6 888,870 - PP_0769 0.43 -0.9 888,870 - PP_0769 0.43 -0.2 889,103 - PP_0769 0.77 -1.8 889,103 - PP_0769 0.77 +0.4 889,103 - PP_0769 0.77 -1.7 889,151 - PP_0769 0.84 -0.3 889,211 + +0.5 889,211 + +0.3 889,211 + -0.4 889,257 - -0.8 889,278 + +0.4 889,278 + -0.1 889,324 + -0.5 889,324 + -0.2 889,382 + -1.4 889,383 - -0.6 889,383 - -0.0 889,383 - +0.1 889,383 - -0.2 889,387 - -0.6 889,430 - +0.8 889,430 - +0.2 889,432 + +0.5 889,432 + +1.0 889,432 + -0.5 889,432 + +0.5 889,432 + +0.6 889,432 + +0.3 889,433 - -1.5 889,433 - +0.0 889,433 - +1.0 889,433 - +1.4 889,433 - +2.7 889,433 - +0.7 889,433 - +0.4 889,433 - -0.1 889,433 - +0.7 889,436 + -0.2 889,436 + +1.3 889,436 + +0.1 889,436 + -1.6 889,436 + +0.2 889,436 + +1.7 889,436 + +1.0 889,437 - -1.2 889,437 - +0.3 889,437 - +0.4 889,437 - -0.6 889,437 - -1.0 889,437 - +0.6 889,437 - -1.1 889,437 - -0.9 889,437 - -1.8 889,437 - +0.7 889,440 + +1.5 889,441 - -2.4 889,452 + -2.6 889,453 - -0.3 889,453 - +0.2 889,453 - +1.9 889,515 + PP_0770 0.23 -1.2
Or see this region's nucleotide sequence