Strain Fitness in Pseudomonas putida KT2440 around PP_0262

Experiment: Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0260 and PP_0261 are separated by 14 nucleotidesPP_0261 and PP_0262 are separated by 82 nucleotidesPP_0262 and PP_0263 overlap by 1 nucleotides PP_0260: PP_0260 - ADP-sugar pyrophosphorylase, at 314,605 to 315,171 _0260 PP_0261: PP_0261 - adenosine-3'(2'),5'-bisphosphate nucleotidase, at 315,186 to 315,986 _0261 PP_0262: PP_0262 - conserved protein of unknown function, at 316,069 to 316,524 _0262 PP_0263: PP_0263 - C4-dicarboxylate transport transcriptional regulatory protein, at 316,524 to 317,930 _0263 Position (kb) 316 317Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 315.167 kb on + strandat 315.167 kb on + strandat 315.167 kb on + strandat 315.167 kb on + strandat 315.167 kb on + strandat 315.167 kb on + strandat 315.167 kb on + strandat 315.168 kb on - strandat 315.301 kb on + strand, within PP_0261at 315.380 kb on + strand, within PP_0261at 315.380 kb on + strand, within PP_0261at 315.380 kb on + strand, within PP_0261at 315.381 kb on - strand, within PP_0261at 315.381 kb on - strand, within PP_0261at 315.381 kb on - strand, within PP_0261at 315.381 kb on - strand, within PP_0261at 315.550 kb on - strand, within PP_0261at 315.616 kb on + strand, within PP_0261at 315.616 kb on + strand, within PP_0261at 315.616 kb on + strand, within PP_0261at 315.617 kb on - strand, within PP_0261at 315.617 kb on - strand, within PP_0261at 315.825 kb on - strand, within PP_0261at 315.920 kb on + strandat 315.927 kb on + strandat 315.927 kb on + strandat 315.927 kb on + strandat 315.946 kb on + strandat 315.984 kb on + strandat 315.984 kb on + strandat 315.984 kb on + strandat 315.984 kb on + strandat 315.984 kb on + strandat 315.984 kb on + strandat 315.984 kb on + strandat 315.984 kb on + strandat 315.985 kb on - strandat 316.067 kb on + strandat 316.067 kb on + strandat 316.067 kb on + strandat 316.067 kb on + strandat 316.068 kb on - strandat 316.070 kb on + strandat 316.070 kb on + strandat 316.071 kb on - strandat 316.071 kb on - strandat 316.085 kb on + strandat 316.085 kb on + strandat 316.086 kb on - strandat 316.256 kb on + strand, within PP_0262at 316.284 kb on + strand, within PP_0262at 316.284 kb on + strand, within PP_0262at 316.284 kb on + strand, within PP_0262at 316.284 kb on + strand, within PP_0262at 316.285 kb on - strand, within PP_0262at 316.285 kb on - strand, within PP_0262at 316.285 kb on - strand, within PP_0262at 316.359 kb on - strand, within PP_0262at 316.815 kb on + strand, within PP_0263at 316.815 kb on + strand, within PP_0263at 316.941 kb on + strand, within PP_0263at 316.941 kb on + strand, within PP_0263at 316.941 kb on + strand, within PP_0263at 316.941 kb on + strand, within PP_0263at 316.941 kb on + strand, within PP_0263at 316.941 kb on + strand, within PP_0263at 316.942 kb on - strand, within PP_0263at 316.942 kb on - strand, within PP_0263at 316.942 kb on - strand, within PP_0263at 316.942 kb on - strand, within PP_0263at 316.942 kb on - strand, within PP_0263at 316.942 kb on - strand, within PP_0263at 316.942 kb on - strand, within PP_0263at 316.942 kb on - strand, within PP_0263at 316.942 kb on - strand, within PP_0263at 316.942 kb on - strand, within PP_0263at 316.942 kb on - strand, within PP_0263at 316.974 kb on - strand, within PP_0263at 316.999 kb on + strand, within PP_0263at 316.999 kb on + strand, within PP_0263at 317.002 kb on + strand, within PP_0263at 317.003 kb on - strand, within PP_0263at 317.065 kb on - strand, within PP_0263at 317.151 kb on + strand, within PP_0263at 317.151 kb on + strand, within PP_0263at 317.152 kb on - strand, within PP_0263at 317.152 kb on - strand, within PP_0263at 317.152 kb on - strand, within PP_0263at 317.522 kb on + strand, within PP_0263

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Per-strain Table

Position Strand Gene LocusTag Fraction Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs
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315,167 + +0.9
315,167 + -0.7
315,167 + -1.5
315,167 + +0.4
315,167 + -0.3
315,167 + +1.1
315,167 + -1.2
315,168 - -0.9
315,301 + PP_0261 0.14 -0.8
315,380 + PP_0261 0.24 -0.8
315,380 + PP_0261 0.24 -1.2
315,380 + PP_0261 0.24 +0.2
315,381 - PP_0261 0.24 -1.0
315,381 - PP_0261 0.24 -1.2
315,381 - PP_0261 0.24 -0.6
315,381 - PP_0261 0.24 +0.2
315,550 - PP_0261 0.45 -2.3
315,616 + PP_0261 0.54 -1.9
315,616 + PP_0261 0.54 +0.3
315,616 + PP_0261 0.54 -3.1
315,617 - PP_0261 0.54 +0.2
315,617 - PP_0261 0.54 +0.7
315,825 - PP_0261 0.80 -2.0
315,920 + -0.3
315,927 + -0.4
315,927 + +0.6
315,927 + -0.9
315,946 + +0.8
315,984 + +0.3
315,984 + -0.4
315,984 + +0.3
315,984 + +0.5
315,984 + +0.3
315,984 + -2.2
315,984 + +0.7
315,984 + +0.4
315,985 - -0.4
316,067 + -0.2
316,067 + +0.2
316,067 + -1.1
316,067 + +1.5
316,068 - -0.2
316,070 + -1.8
316,070 + -0.5
316,071 - +1.0
316,071 - -3.1
316,085 + +0.2
316,085 + +0.9
316,086 - -2.3
316,256 + PP_0262 0.41 -0.1
316,284 + PP_0262 0.47 -0.2
316,284 + PP_0262 0.47 -0.3
316,284 + PP_0262 0.47 +0.3
316,284 + PP_0262 0.47 +1.4
316,285 - PP_0262 0.47 +1.0
316,285 - PP_0262 0.47 +1.4
316,285 - PP_0262 0.47 +0.3
316,359 - PP_0262 0.64 +1.2
316,815 + PP_0263 0.21 -1.5
316,815 + PP_0263 0.21 +0.1
316,941 + PP_0263 0.30 +0.2
316,941 + PP_0263 0.30 +0.1
316,941 + PP_0263 0.30 -0.9
316,941 + PP_0263 0.30 +0.4
316,941 + PP_0263 0.30 -0.7
316,941 + PP_0263 0.30 -0.2
316,942 - PP_0263 0.30 +0.5
316,942 - PP_0263 0.30 -1.8
316,942 - PP_0263 0.30 +0.0
316,942 - PP_0263 0.30 +1.0
316,942 - PP_0263 0.30 -1.0
316,942 - PP_0263 0.30 +0.8
316,942 - PP_0263 0.30 -1.5
316,942 - PP_0263 0.30 -0.4
316,942 - PP_0263 0.30 -0.4
316,942 - PP_0263 0.30 -3.5
316,942 - PP_0263 0.30 -1.1
316,974 - PP_0263 0.32 +1.9
316,999 + PP_0263 0.34 -0.1
316,999 + PP_0263 0.34 -1.8
317,002 + PP_0263 0.34 +0.4
317,003 - PP_0263 0.34 +0.6
317,065 - PP_0263 0.38 +0.4
317,151 + PP_0263 0.45 -1.5
317,151 + PP_0263 0.45 +0.2
317,152 - PP_0263 0.45 -0.9
317,152 - PP_0263 0.45 -0.2
317,152 - PP_0263 0.45 +1.3
317,522 + PP_0263 0.71 -0.8

Or see this region's nucleotide sequence