Experiment: Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0189 and PP_0190 are separated by 222 nucleotides PP_0190 and PP_0191 are separated by 231 nucleotides PP_0191 and PP_0192 are separated by 8 nucleotides
PP_0189: PP_0189 - putative heme biosynthesis protein, at 240,830 to 242,068
_0189
PP_0190: PP_0190 - putative disulfide bond formation protein B, at 242,291 to 242,797
_0190
PP_0191: PP_0191 - Transcriptional regulatory protein AlgQ, at 243,029 to 243,499
_0191
PP_0192: PP_0192 - putative FKBP-type 25 kDa peptidyl-prolyl cis-trans isomerase, at 243,508 to 244,170
_0192
Position (kb) 242
243 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 241.421 kb on + strand, within PP_0189 at 241.421 kb on + strand, within PP_0189 at 241.421 kb on + strand, within PP_0189 at 241.422 kb on - strand, within PP_0189 at 241.422 kb on - strand, within PP_0189 at 241.563 kb on + strand, within PP_0189 at 241.653 kb on - strand, within PP_0189 at 241.674 kb on + strand, within PP_0189 at 241.675 kb on - strand, within PP_0189 at 241.728 kb on - strand, within PP_0189 at 241.896 kb on - strand, within PP_0189 at 242.112 kb on + strand at 242.117 kb on + strand at 242.166 kb on + strand at 242.173 kb on + strand at 242.174 kb on - strand at 242.349 kb on + strand, within PP_0190 at 242.349 kb on + strand, within PP_0190 at 242.350 kb on - strand, within PP_0190 at 242.350 kb on - strand, within PP_0190 at 242.496 kb on - strand at 242.587 kb on - strand, within PP_0190 at 242.587 kb on - strand, within PP_0190 at 242.587 kb on - strand, within PP_0190 at 242.587 kb on - strand, within PP_0190 at 242.587 kb on - strand, within PP_0190 at 242.768 kb on + strand at 242.840 kb on - strand at 242.840 kb on - strand at 242.840 kb on - strand at 242.847 kb on + strand at 242.850 kb on + strand at 242.860 kb on + strand at 242.880 kb on + strand at 242.880 kb on + strand at 242.907 kb on + strand at 242.908 kb on - strand at 242.924 kb on + strand at 243.006 kb on + strand at 243.037 kb on + strand at 243.038 kb on - strand at 243.203 kb on + strand, within PP_0191 at 243.203 kb on + strand, within PP_0191 at 243.319 kb on + strand, within PP_0191 at 243.319 kb on + strand, within PP_0191 at 243.554 kb on + strand at 243.554 kb on + strand at 243.554 kb on + strand at 243.555 kb on - strand at 243.590 kb on + strand, within PP_0192 at 243.590 kb on + strand, within PP_0192 at 243.610 kb on + strand, within PP_0192 at 243.611 kb on - strand, within PP_0192 at 243.743 kb on + strand, within PP_0192 at 243.744 kb on - strand, within PP_0192 at 243.744 kb on - strand, within PP_0192 at 243.744 kb on - strand, within PP_0192
Per-strain Table
Position Strand Gene LocusTag Fraction Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs remove 241,421 + PP_0189 0.48 +1.1 241,421 + PP_0189 0.48 -1.2 241,421 + PP_0189 0.48 +0.1 241,422 - PP_0189 0.48 +1.8 241,422 - PP_0189 0.48 -0.5 241,563 + PP_0189 0.59 -1.9 241,653 - PP_0189 0.66 +1.5 241,674 + PP_0189 0.68 +0.9 241,675 - PP_0189 0.68 +0.5 241,728 - PP_0189 0.72 +0.3 241,896 - PP_0189 0.86 -0.7 242,112 + -0.9 242,117 + +1.8 242,166 + -0.7 242,173 + +1.5 242,174 - -0.0 242,349 + PP_0190 0.11 +0.7 242,349 + PP_0190 0.11 +0.8 242,350 - PP_0190 0.12 -0.4 242,350 - PP_0190 0.12 +0.9 242,496 - +0.5 242,587 - PP_0190 0.58 -0.9 242,587 - PP_0190 0.58 +0.2 242,587 - PP_0190 0.58 +0.7 242,587 - PP_0190 0.58 +3.7 242,587 - PP_0190 0.58 -2.6 242,768 + +0.5 242,840 - -0.6 242,840 - -2.6 242,840 - -1.2 242,847 + -0.7 242,850 + -1.5 242,860 + -0.2 242,880 + +0.2 242,880 + -1.3 242,907 + -0.8 242,908 - -0.4 242,924 + +0.0 243,006 + +0.5 243,037 + -1.5 243,038 - +0.3 243,203 + PP_0191 0.37 -1.1 243,203 + PP_0191 0.37 -0.2 243,319 + PP_0191 0.62 -2.1 243,319 + PP_0191 0.62 -1.1 243,554 + +0.4 243,554 + +2.5 243,554 + -0.6 243,555 - +0.9 243,590 + PP_0192 0.12 +0.4 243,590 + PP_0192 0.12 -0.3 243,610 + PP_0192 0.15 +0.8 243,611 - PP_0192 0.16 +0.2 243,743 + PP_0192 0.35 +0.0 243,744 - PP_0192 0.36 -1.2 243,744 - PP_0192 0.36 +1.9 243,744 - PP_0192 0.36 +0.0
Or see this region's nucleotide sequence