Strain Fitness in Pseudomonas putida KT2440 around PP_0045

Experiment: Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0044 and PP_0045 are separated by 68 nucleotidesPP_0045 and PP_0046 are separated by 404 nucleotides PP_0044: PP_0044 - cobalt-zinc-cadmium resistance protein, at 49,399 to 50,649 _0044 PP_0045: PP_0045 - cobalt-zinc-cadmium resistance protein, at 50,718 to 51,989 _0045 PP_0046: PP_0046 - tyrosine-specific outer membrane porin D, at 52,394 to 53,737 _0046 Position (kb) 50 51 52Strain fitness (log2 ratio) -2 -1 0 1 2 3at 49.751 kb on + strand, within PP_0044at 49.751 kb on + strand, within PP_0044at 49.752 kb on - strand, within PP_0044at 49.752 kb on - strand, within PP_0044at 49.940 kb on - strand, within PP_0044at 49.940 kb on - strand, within PP_0044at 49.970 kb on + strand, within PP_0044at 49.992 kb on + strand, within PP_0044at 50.302 kb on - strand, within PP_0044at 50.643 kb on + strandat 50.643 kb on + strandat 50.644 kb on - strandat 50.653 kb on + strandat 50.654 kb on - strandat 50.654 kb on - strandat 50.654 kb on - strandat 50.668 kb on + strandat 50.935 kb on + strand, within PP_0045at 50.936 kb on - strand, within PP_0045at 50.936 kb on - strand, within PP_0045at 51.099 kb on - strand, within PP_0045at 51.099 kb on - strand, within PP_0045at 51.099 kb on - strand, within PP_0045at 51.099 kb on - strand, within PP_0045at 51.143 kb on - strand, within PP_0045at 51.153 kb on + strand, within PP_0045at 51.153 kb on + strand, within PP_0045at 51.153 kb on + strand, within PP_0045at 51.153 kb on + strand, within PP_0045at 51.154 kb on - strand, within PP_0045at 51.154 kb on - strand, within PP_0045at 51.154 kb on - strand, within PP_0045at 51.154 kb on - strand, within PP_0045at 51.164 kb on + strand, within PP_0045at 51.164 kb on + strand, within PP_0045at 51.164 kb on + strand, within PP_0045at 51.165 kb on - strand, within PP_0045at 51.219 kb on + strand, within PP_0045at 51.219 kb on + strand, within PP_0045at 51.220 kb on - strand, within PP_0045at 51.220 kb on - strand, within PP_0045at 51.263 kb on + strand, within PP_0045at 51.264 kb on - strandat 51.370 kb on + strand, within PP_0045at 51.371 kb on - strand, within PP_0045at 51.464 kb on + strand, within PP_0045at 51.465 kb on - strand, within PP_0045at 51.465 kb on - strand, within PP_0045at 51.465 kb on - strand, within PP_0045at 51.612 kb on + strand, within PP_0045at 51.640 kb on + strand, within PP_0045at 51.640 kb on + strand, within PP_0045at 51.640 kb on + strand, within PP_0045at 51.640 kb on + strand, within PP_0045at 51.640 kb on + strand, within PP_0045at 51.640 kb on + strand, within PP_0045at 51.641 kb on - strand, within PP_0045at 51.722 kb on + strand, within PP_0045at 51.723 kb on - strand, within PP_0045at 51.745 kb on + strand, within PP_0045at 51.745 kb on + strand, within PP_0045at 51.746 kb on - strand, within PP_0045at 51.768 kb on - strand, within PP_0045at 51.964 kb on - strandat 51.979 kb on + strandat 51.980 kb on - strandat 52.064 kb on + strandat 52.064 kb on + strandat 52.093 kb on + strandat 52.093 kb on + strandat 52.094 kb on - strandat 52.237 kb on + strandat 52.237 kb on + strandat 52.237 kb on + strandat 52.261 kb on + strandat 52.262 kb on - strandat 52.293 kb on - strandat 52.311 kb on - strandat 52.336 kb on + strandat 52.336 kb on + strandat 52.336 kb on + strandat 52.337 kb on - strandat 52.355 kb on - strandat 52.363 kb on + strandat 52.408 kb on - strandat 52.415 kb on + strandat 52.415 kb on + strandat 52.416 kb on - strandat 52.448 kb on + strandat 52.448 kb on + strandat 52.449 kb on - strandat 52.449 kb on - strandat 52.453 kb on + strandat 52.523 kb on - strandat 52.568 kb on + strandat 52.568 kb on + strand, within PP_0046at 52.569 kb on - strand, within PP_0046at 52.588 kb on + strand, within PP_0046at 52.649 kb on - strand, within PP_0046at 52.657 kb on + strand, within PP_0046at 52.658 kb on - strand, within PP_0046at 52.735 kb on + strand, within PP_0046at 52.735 kb on + strand, within PP_0046at 52.762 kb on + strand, within PP_0046at 52.762 kb on + strand, within PP_0046at 52.763 kb on - strand, within PP_0046at 52.787 kb on + strand, within PP_0046at 52.787 kb on + strand, within PP_0046at 52.787 kb on + strand, within PP_0046at 52.787 kb on + strand, within PP_0046

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Per-strain Table

Position Strand Gene LocusTag Fraction Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs
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49,751 + PP_0044 0.28 -0.1
49,751 + PP_0044 0.28 +0.5
49,752 - PP_0044 0.28 +1.0
49,752 - PP_0044 0.28 -1.1
49,940 - PP_0044 0.43 -0.1
49,940 - PP_0044 0.43 +0.3
49,970 + PP_0044 0.46 +0.7
49,992 + PP_0044 0.47 -2.1
50,302 - PP_0044 0.72 +1.3
50,643 + -1.3
50,643 + -1.2
50,644 - +0.5
50,653 + -1.2
50,654 - +1.5
50,654 - +0.0
50,654 - +0.0
50,668 + -0.2
50,935 + PP_0045 0.17 +1.3
50,936 - PP_0045 0.17 -0.4
50,936 - PP_0045 0.17 +0.6
51,099 - PP_0045 0.30 -0.5
51,099 - PP_0045 0.30 -0.2
51,099 - PP_0045 0.30 -0.9
51,099 - PP_0045 0.30 +0.2
51,143 - PP_0045 0.33 -0.4
51,153 + PP_0045 0.34 +0.9
51,153 + PP_0045 0.34 +0.4
51,153 + PP_0045 0.34 +1.3
51,153 + PP_0045 0.34 +0.5
51,154 - PP_0045 0.34 +0.6
51,154 - PP_0045 0.34 +3.3
51,154 - PP_0045 0.34 +0.6
51,154 - PP_0045 0.34 -0.7
51,164 + PP_0045 0.35 +0.6
51,164 + PP_0045 0.35 -0.5
51,164 + PP_0045 0.35 +1.9
51,165 - PP_0045 0.35 +1.2
51,219 + PP_0045 0.39 -0.4
51,219 + PP_0045 0.39 +0.5
51,220 - PP_0045 0.39 -0.9
51,220 - PP_0045 0.39 +1.0
51,263 + PP_0045 0.43 +1.5
51,264 - +1.7
51,370 + PP_0045 0.51 -1.0
51,371 - PP_0045 0.51 -0.8
51,464 + PP_0045 0.59 +0.8
51,465 - PP_0045 0.59 +1.6
51,465 - PP_0045 0.59 -2.7
51,465 - PP_0045 0.59 +1.1
51,612 + PP_0045 0.70 -0.2
51,640 + PP_0045 0.72 +0.1
51,640 + PP_0045 0.72 +0.3
51,640 + PP_0045 0.72 -0.9
51,640 + PP_0045 0.72 -2.0
51,640 + PP_0045 0.72 -1.2
51,640 + PP_0045 0.72 +1.1
51,641 - PP_0045 0.73 +0.7
51,722 + PP_0045 0.79 -0.3
51,723 - PP_0045 0.79 -0.6
51,745 + PP_0045 0.81 +1.4
51,745 + PP_0045 0.81 +0.1
51,746 - PP_0045 0.81 +1.3
51,768 - PP_0045 0.83 +1.9
51,964 - +0.1
51,979 + -0.1
51,980 - -1.4
52,064 + -0.2
52,064 + +0.9
52,093 + -1.6
52,093 + -0.7
52,094 - -1.1
52,237 + +0.9
52,237 + +0.0
52,237 + -0.4
52,261 + -0.8
52,262 - -2.0
52,293 - +1.6
52,311 - +2.4
52,336 + +0.3
52,336 + -1.4
52,336 + +1.2
52,337 - -2.6
52,355 - -0.4
52,363 + -1.5
52,408 - -0.2
52,415 + +0.2
52,415 + +0.6
52,416 - +1.4
52,448 + +0.5
52,448 + +0.2
52,449 - -1.8
52,449 - +0.3
52,453 + -0.7
52,523 - -1.4
52,568 + +0.7
52,568 + PP_0046 0.13 +0.2
52,569 - PP_0046 0.13 -1.2
52,588 + PP_0046 0.14 +0.6
52,649 - PP_0046 0.19 +0.5
52,657 + PP_0046 0.20 +0.3
52,658 - PP_0046 0.20 +2.7
52,735 + PP_0046 0.25 +1.6
52,735 + PP_0046 0.25 +1.5
52,762 + PP_0046 0.27 -0.5
52,762 + PP_0046 0.27 +0.1
52,763 - PP_0046 0.27 +0.2
52,787 + PP_0046 0.29 +2.0
52,787 + PP_0046 0.29 -0.3
52,787 + PP_0046 0.29 +0.5
52,787 + PP_0046 0.29 -0.4

Or see this region's nucleotide sequence